Analysis of interatomic Contacts of Structural Units in PDB entry:
6JND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JND entry

There is 1 chain in PDB entry 6JND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6JND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
79 95Right-handed alpha
Helix 3
AA3
A
111 115Right-handed 310
Helix 4
AA4
A
116 129Right-handed alpha
Helix 5
AA5
A
131 135Right-handed 310
Helix 6
AA6
A
149 165Right-handed alpha
Helix 7
AA7
A
169 173Right-handed 310
Helix 8
AA8
A
189 207Right-handed alpha
Helix 9
AA9
A
221 234Right-handed alpha
Helix 10
AB1
A
256 265Right-handed alpha
Helix 11
AB2
A
280 286Right-handed alpha
Helix 12
AB3
A
326 332Right-handed alpha
Helix 13
AB4
A
339 344Right-handed alpha
Helix 14
AB5
A
345 361Right-handed alpha
Helix 15
AB6
A
365 392Right-handed alpha
Helix 16
AB7
A
394 412Right-handed alpha
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There are 3 sheets in PDB entry 6JND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 45first strand
Strand 2
A
51 60anti-parallel
Strand 3
A
104 108anti-parallel
Strand 4
A
72 74parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
140 141parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
214 218parallel
Strand 4
A
291 294parallel
Strand 5
A
313 314parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il