Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JNF entry

There are 10 chains in PDB entry 6JNF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 47	GLY 373
B	ILE 17	LEU 57
C	PHE 87	PHE 130
D	HIS 17	LYS 50
E	GLN 25	LEU 61
F	GLN 47	GLY 373
G	ILE 17	LEU 57
H	PHE 87	PHE 130
I	HIS 17	LYS 50
J	GLN 25	LEU 61

There are 22 helices in PDB entry 6JNF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	72	Right-handed alpha
Helix 2	AA2	A	368	373	Right-handed alpha
Helix 3	AA3	B	18	26	Right-handed alpha
Helix 4	AA4	B	32	43	Right-handed alpha
Helix 5	AA5	B	50	54	Right-handed 310
Helix 6	AA6	C	97	102	Right-handed alpha
Helix 7	AA7	C	110	130	Right-handed alpha
Helix 8	AA8	D	18	41	Right-handed alpha
Helix 9	AA9	D	44	49	Right-handed alpha
Helix 10	AB1	E	31	50	Right-handed alpha
Helix 11	AB2	E	51	57	Right-handed alpha
Helix 12	AB3	F	67	72	Right-handed alpha
Helix 13	AB4	F	368	373	Right-handed alpha
Helix 14	AB5	G	18	26	Right-handed alpha
Helix 15	AB6	G	32	43	Right-handed alpha
Helix 16	AB7	G	50	54	Right-handed 310
Helix 17	AB8	H	97	102	Right-handed alpha
Helix 18	AB9	H	110	130	Right-handed alpha
Helix 19	AC1	I	18	41	Right-handed alpha
Helix 20	AC2	I	44	49	Right-handed alpha
Helix 21	AC3	J	31	50	Right-handed alpha
Helix 22	AC4	J	51	57	Right-handed alpha

There are 10 sheets in PDB entry 6JNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	97	106	anti-parallel
Strand 3	A	84	91	anti-parallel
Strand 4	A	351	362	parallel
Strand 5	A	337	345	anti-parallel
Strand 6	A	323	330	anti-parallel
Strand 7	A	312	315	anti-parallel
Strand 8	A	306	309	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	130	132	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	137	142	anti-parallel
Strand 3	A	153	157	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	181	183	anti-parallel
Strand 3	A	195	198	anti-parallel
Strand 4	A	218	219	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	201	203	anti-parallel
Strand 3	A	209	213	anti-parallel
Strand 4	A	232	236	anti-parallel
Strand 5	A	245	249	anti-parallel
Strand 6	A	255	259	anti-parallel
Strand 7	A	271	274	anti-parallel
Strand 8	A	300	303	anti-parallel
Strand 9	A	318	319	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	121	first strand
Strand 2	F	97	106	anti-parallel
Strand 3	F	84	91	anti-parallel
Strand 4	F	351	362	parallel
Strand 5	F	337	345	anti-parallel
Strand 6	F	323	330	anti-parallel
Strand 7	F	312	315	anti-parallel
Strand 8	F	306	309	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	117	first strand
Strand 2	F	130	132	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	127	first strand
Strand 2	F	137	142	anti-parallel
Strand 3	F	153	157	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	167	first strand
Strand 2	F	181	183	anti-parallel
Strand 3	F	195	198	anti-parallel
Strand 4	F	218	219	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	177	first strand
Strand 2	F	201	203	anti-parallel
Strand 3	F	209	213	anti-parallel
Strand 4	F	232	236	anti-parallel
Strand 5	F	245	249	anti-parallel
Strand 6	F	255	259	anti-parallel
Strand 7	F	271	274	anti-parallel
Strand 8	F	300	303	anti-parallel
Strand 9	F	318	319	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JNF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNF