Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JNN entry

There are 16 chains in PDB entry 6JNN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1265SER 1353
D
 T 1 T 2
D
 T 4 G 12
C
 C 1 A 12
B
 ARG 1265SER 1353
F
 T 1 T 2
F
 T 4 G 12
E
 C 1 A 12
I
 T 1 T 2
I
 T 4 G 12
H
 C 1 A 12
L
 T 1 T 2
L
 T 4 G 12
K
 C 1 A 12
N
 ARG 1265SER 1353
G
 ASN 1266SER 1353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6JNN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1280 1286Right-handed alpha
Helix 2
AA2
A
1287 1291Right-handed 310
Helix 3
AA3
A
1309 1322Right-handed alpha
Helix 4
AA4
A
1339 1351Right-handed alpha
Helix 5
AA5
B
1279 1286Right-handed alpha
Helix 6
AA6
B
1287 1290Right-handed 310
Helix 7
AA7
B
1309 1322Right-handed alpha
Helix 8
AA8
B
1339 1351Right-handed alpha
Helix 9
AA9
N
1280 1287Right-handed alpha
Helix 10
AB1
N
1288 1291Right-handed 310
Helix 11
AB2
N
1309 1322Right-handed alpha
Helix 12
AB3
N
1339 1351Right-handed alpha
Helix 13
AB4
G
1279 1287Right-handed alpha
Helix 14
AB5
G
1288 1291Right-handed 310
Helix 15
AB6
G
1309 1322Right-handed alpha
Helix 16
AB7
G
1339 1351Right-handed alpha
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There are 9 sheets in PDB entry 6JNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1266 1267first strand
Strand 2
A
1276 1277anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1296 1297first strand
Strand 2
A
1306 1307anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1326 1327first strand
Strand 2
A
1336 1337anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1266 1267first strand
Strand 2
B
1276 1277anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1296 1297first strand
Strand 2
B
1306 1307anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1326 1327first strand
Strand 2
B
1336 1337anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
1296 1297first strand
Strand 2
N
1306 1307anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
1326 1327first strand
Strand 2
N
1336 1337anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
1326 1327first strand
Strand 2
G
1336 1337anti-parallel
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