Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JNO entry

There are 4 chains in PDB entry 6JNO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 264PRO 458
B
 PRO 264PRO 458
C
 PRO 231LEU 455
D
 PRO 231LEU 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6JNO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
264 286Right-handed alpha
Helix 2
AA2
A
288 292Right-handed 310
Helix 3
AA3
A
293 317Right-handed alpha
Helix 4
AA4
A
318 320Right-handed 310
Helix 5
AA5
A
334 340Right-handed alpha
Helix 6
AA6
A
342 353Right-handed alpha
Helix 7
AA7
A
353 360Right-handed alpha
Helix 8
AA8
A
363 376Right-handed alpha
Helix 9
AA9
A
385 408Right-handed alpha
Helix 10
AB1
A
413 420Right-handed alpha
Helix 11
AB2
A
421 435Right-handed alpha
Helix 12
AB3
A
436 457Right-handed alpha
Helix 13
AB4
B
265 285Right-handed alpha
Helix 14
AB5
B
288 292Right-handed 310
Helix 15
AB6
B
293 317Right-handed alpha
Helix 16
AB7
B
318 320Right-handed 310
Helix 17
AB8
B
334 340Right-handed alpha
Helix 18
AB9
B
342 353Right-handed alpha
Helix 19
AC1
B
353 360Right-handed alpha
Helix 20
AC2
B
363 376Right-handed alpha
Helix 21
AC3
B
385 408Right-handed alpha
Helix 22
AC4
B
413 420Right-handed alpha
Helix 23
AC5
B
421 436Right-handed alpha
Helix 24
AC6
B
436 443Right-handed alpha
Helix 25
AC7
B
443 457Right-handed alpha
Helix 26
AC8
C
232 241Right-handed alpha
Helix 27
AC9
C
265 267Right-handed 310
Helix 28
AD1
C
268 286Right-handed alpha
Helix 29
AD2
C
288 292Right-handed 310
Helix 30
AD3
C
293 317Right-handed alpha
Helix 31
AD4
C
318 320Right-handed 310
Helix 32
AD5
C
334 340Right-handed alpha
Helix 33
AD6
C
342 353Right-handed alpha
Helix 34
AD7
C
353 360Right-handed alpha
Helix 35
AD8
C
363 376Right-handed alpha
Helix 36
AD9
C
385 408Right-handed alpha
Helix 37
AE1
C
413 420Right-handed alpha
Helix 38
AE2
C
421 436Right-handed alpha
Helix 39
AE3
C
436 452Right-handed alpha
Helix 40
AE4
D
232 240Right-handed alpha
Helix 41
AE5
D
263 285Right-handed alpha
Helix 42
AE6
D
288 292Right-handed 310
Helix 43
AE7
D
293 317Right-handed alpha
Helix 44
AE8
D
318 320Right-handed 310
Helix 45
AE9
D
334 340Right-handed alpha
Helix 46
AF1
D
342 353Right-handed alpha
Helix 47
AF2
D
353 360Right-handed alpha
Helix 48
AF3
D
363 376Right-handed alpha
Helix 49
AF4
D
385 408Right-handed alpha
Helix 50
AF5
D
413 420Right-handed alpha
Helix 51
AF6
D
421 435Right-handed alpha
Helix 52
AF7
D
436 452Right-handed alpha
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There are 4 sheets in PDB entry 6JNO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
331 333anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 325first strand
Strand 2
B
331 333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 324first strand
Strand 2
C
332 333anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
323 325first strand
Strand 2
D
331 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il