Analysis of interatomic Contacts of Structural Units in PDB entry:
6JNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JNR entry

There are 4 chains in PDB entry 6JNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 246HIS 459
B
 ASP 245HIS 459
C
 HIS 1GLN 9
D
 HIS 1GLU 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6JNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
248 260Right-handed alpha
Helix 2
AA2
A
263 285Right-handed alpha
Helix 3
AA3
A
293 317Right-handed alpha
Helix 4
AA4
A
334 340Right-handed alpha
Helix 5
AA5
A
342 353Right-handed alpha
Helix 6
AA6
A
353 361Right-handed alpha
Helix 7
AA7
A
363 376Right-handed alpha
Helix 8
AA8
A
385 408Right-handed alpha
Helix 9
AA9
A
413 420Right-handed alpha
Helix 10
AB1
A
421 443Right-handed alpha
Helix 11
AB2
A
448 455Right-handed alpha
Helix 12
AB3
B
247 259Right-handed alpha
Helix 13
AB4
B
263 285Right-handed alpha
Helix 14
AB5
B
288 292Right-handed 310
Helix 15
AB6
B
293 317Right-handed alpha
Helix 16
AB7
B
318 320Right-handed 310
Helix 17
AB8
B
334 340Right-handed alpha
Helix 18
AB9
B
342 353Right-handed alpha
Helix 19
AC1
B
353 361Right-handed alpha
Helix 20
AC2
B
363 376Right-handed alpha
Helix 21
AC3
B
385 408Right-handed alpha
Helix 22
AC4
B
413 420Right-handed alpha
Helix 23
AC5
B
421 443Right-handed alpha
Helix 24
AC6
B
448 455Right-handed alpha
Helix 25
AC7
C
2 9Right-handed alpha
Helix 26
AC8
D
2 9Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6JNR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
331 333anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 325first strand
Strand 2
B
331 333anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il