Analysis of interatomic Contacts of Structural Units in PDB entry:
6JO6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JO6 entry

There are 19 chains in PDB entry 6JO6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	GLY 751
B	HIS 3	PHE 734
C	ALA 2	TYR 81
D	TRP 53	ILE 196
E	GLY 36	ALA 96
F	ASP 63	ARG 227
G	LEU 32	GLY 122
I	PRO 68	PRO 104
J	MET 1	PHE 39
K	PHE 29	GLY 109
L	GLY 53	CYS 188
1	LYS 35	PHE 228
3	LEU 61	PHE 262
7	VAL 29	ILE 240
8	ARG 27	LEU 243
Z	LYS 35	PHE 228
4	LEU 58	ARG 263
5	ARG 32	SER 256
6	ARG 29	PRO 257

There are150 helices in PDB entry 6JO6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	46	55	Right-handed alpha
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	65	98	Right-handed alpha
Helix 6	AA6	A	100	107	Right-handed alpha
Helix 7	AA7	A	123	128	Right-handed 310
Helix 8	AA8	A	143	151	Right-handed alpha
Helix 9	AA9	A	155	183	Right-handed alpha
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	193	220	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	233	237	Right-handed 310
Helix 14	AB5	A	239	246	Right-handed alpha
Helix 15	AB6	A	246	254	Right-handed alpha
Helix 16	AB7	A	255	259	Right-handed 310
Helix 17	AB8	A	261	266	Right-handed alpha
Helix 18	AB9	A	268	273	Right-handed 310
Helix 19	AC1	A	290	309	Right-handed alpha
Helix 20	AC2	A	321	329	Right-handed alpha
Helix 21	AC3	A	340	345	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	416	Right-handed alpha
Helix 24	AC6	A	425	433	Right-handed alpha
Helix 25	AC7	A	433	465	Right-handed alpha
Helix 26	AC8	A	467	471	Right-handed 310
Helix 27	AC9	A	481	498	Right-handed alpha
Helix 28	AD1	A	507	511	Right-handed 310
Helix 29	AD2	A	529	556	Right-handed alpha
Helix 30	AD3	A	565	570	Right-handed 310
Helix 31	AD4	A	587	618	Right-handed alpha
Helix 32	AD5	A	634	639	Right-handed alpha
Helix 33	AD6	A	641	649	Right-handed alpha
Helix 34	AD7	A	649	654	Right-handed alpha
Helix 35	AD8	A	654	659	Right-handed alpha
Helix 36	AD9	A	665	688	Right-handed alpha
Helix 37	AE1	A	689	707	Right-handed alpha
Helix 38	AE2	A	719	751	Right-handed alpha
Helix 39	AE3	B	10	15	Right-handed alpha
Helix 40	AE4	B	19	28	Right-handed alpha
Helix 41	AE5	B	31	35	Right-handed 310
Helix 42	AE6	B	39	73	Right-handed alpha
Helix 43	AE7	B	74	79	Right-handed alpha
Helix 44	AE8	B	98	105	Right-handed alpha
Helix 45	AE9	B	120	128	Right-handed alpha
Helix 46	AF1	B	132	157	Right-handed alpha
Helix 47	AF2	B	165	170	Right-handed alpha
Helix 48	AF3	B	171	198	Right-handed alpha
Helix 49	AF4	B	198	204	Right-handed alpha
Helix 50	AF5	B	223	229	Right-handed alpha
Helix 51	AF6	B	230	236	Right-handed 310
Helix 52	AF7	B	270	289	Right-handed alpha
Helix 53	AF8	B	301	309	Right-handed alpha
Helix 54	AF9	B	311	315	Right-handed 310
Helix 55	AG1	B	323	328	Right-handed alpha
Helix 56	AG2	B	330	356	Right-handed alpha
Helix 57	AG3	B	365	398	Right-handed alpha
Helix 58	AG4	B	401	405	Right-handed 310
Helix 59	AG5	B	407	415	Right-handed alpha
Helix 60	AG6	B	415	447	Right-handed alpha
Helix 61	AG7	B	449	453	Right-handed 310
Helix 62	AG8	B	458	469	Right-handed alpha
Helix 63	AG9	B	484	490	Right-handed alpha
Helix 64	AH1	B	494	503	Right-handed alpha
Helix 65	AH2	B	514	541	Right-handed alpha
Helix 66	AH3	B	550	554	Right-handed 310
Helix 67	AH4	B	572	605	Right-handed alpha
Helix 68	AH5	B	606	614	Right-handed alpha
Helix 69	AH6	B	616	624	Right-handed alpha
Helix 70	AH7	B	626	628	Right-handed 310
Helix 71	AH8	B	629	634	Right-handed alpha
Helix 72	AH9	B	644	667	Right-handed alpha
Helix 73	AI1	B	668	686	Right-handed alpha
Helix 74	AI2	B	702	733	Right-handed alpha
Helix 75	AI3	C	17	21	Right-handed 310
Helix 76	AI4	C	44	48	Right-handed 310
Helix 77	AI5	C	52	58	Right-handed alpha
Helix 78	AI6	D	75	81	Right-handed alpha
Helix 79	AI7	D	117	131	Right-handed alpha
Helix 80	AI8	F	63	67	Right-handed 310
Helix 81	AI9	F	73	92	Right-handed alpha
Helix 82	AJ1	F	98	121	Right-handed alpha
Helix 83	AJ2	F	136	144	Right-handed alpha
Helix 84	AJ3	F	149	176	Right-handed alpha
Helix 85	AJ4	F	179	186	Right-handed alpha
Helix 86	AJ5	F	188	199	Right-handed alpha
Helix 87	AJ6	F	201	212	Right-handed alpha
Helix 88	AJ7	G	33	51	Right-handed alpha
Helix 89	AJ8	G	53	61	Right-handed alpha
Helix 90	AJ9	G	96	121	Right-handed alpha
Helix 91	AK1	I	74	100	Right-handed alpha
Helix 92	AK2	J	2	9	Right-handed alpha
Helix 93	AK3	J	10	33	Right-handed alpha
Helix 94	AK4	K	32	48	Right-handed alpha
Helix 95	AK5	K	86	107	Right-handed alpha
Helix 96	AK6	L	62	72	Right-handed alpha
Helix 97	AK7	L	80	104	Right-handed alpha
Helix 98	AK8	L	112	140	Right-handed alpha
Helix 99	AK9	L	163	188	Right-handed alpha
Helix 100	AL1	1	67	99	Right-handed alpha
Helix 101	AL2	1	105	110	Right-handed 310
Helix 102	AL3	1	126	148	Right-handed alpha
Helix 103	AL4	1	155	159	Right-handed 310
Helix 104	AL5	1	169	198	Right-handed alpha
Helix 105	AL6	1	201	212	Right-handed alpha
Helix 106	AL7	3	83	114	Right-handed alpha
Helix 107	AL8	3	124	128	Right-handed 310
Helix 108	AL9	3	131	135	Right-handed 310
Helix 109	AM1	3	143	168	Right-handed alpha
Helix 110	AM2	3	170	174	Right-handed 310
Helix 111	AM3	3	206	238	Right-handed alpha
Helix 112	AM4	3	241	252	Right-handed alpha
Helix 113	AM5	7	61	95	Right-handed alpha
Helix 114	AM6	7	104	113	Right-handed alpha
Helix 115	AM7	7	116	141	Right-handed alpha
Helix 116	AM8	7	143	147	Right-handed 310
Helix 117	AM9	7	179	212	Right-handed alpha
Helix 118	AN1	7	214	225	Right-handed alpha
Helix 119	AN2	8	42	47	Right-handed alpha
Helix 120	AN3	8	62	94	Right-handed alpha
Helix 121	AN4	8	106	115	Right-handed alpha
Helix 122	AN5	8	118	143	Right-handed alpha
Helix 123	AN6	8	177	181	Right-handed 310
Helix 124	AN7	8	184	213	Right-handed alpha
Helix 125	AN8	8	216	227	Right-handed alpha
Helix 126	AN9	Z	67	98	Right-handed alpha
Helix 127	AO1	Z	107	112	Right-handed alpha
Helix 128	AO2	Z	126	148	Right-handed alpha
Helix 129	AO3	Z	169	199	Right-handed alpha
Helix 130	AO4	Z	201	212	Right-handed alpha
Helix 131	AO5	4	89	122	Right-handed alpha
Helix 132	AO6	4	133	137	Right-handed 310
Helix 133	AO7	4	145	170	Right-handed alpha
Helix 134	AO8	4	195	199	Right-handed 310
Helix 135	AO9	4	208	237	Right-handed alpha
Helix 136	AP1	4	239	250	Right-handed alpha
Helix 137	AP2	4	255	262	Right-handed alpha
Helix 138	AP3	5	63	95	Right-handed alpha
Helix 139	AP4	5	99	103	Right-handed 310
Helix 140	AP5	5	117	142	Right-handed alpha
Helix 141	AP6	5	166	170	Right-handed 310
Helix 142	AP7	5	179	208	Right-handed alpha
Helix 143	AP8	5	210	221	Right-handed alpha
Helix 144	AP9	5	226	231	Right-handed alpha
Helix 145	AQ1	6	60	92	Right-handed alpha
Helix 146	AQ2	6	96	100	Right-handed 310
Helix 147	AQ3	6	109	134	Right-handed alpha
Helix 148	AQ4	6	168	198	Right-handed alpha
Helix 149	AQ5	6	200	211	Right-handed alpha
Helix 150	AQ6	6	252	256	Right-handed 310

There are 14 sheets in PDB entry 6JO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	129	132	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	115	first strand
Strand 2	D	83	89	anti-parallel
Strand 3	D	137	141	anti-parallel
Strand 4	D	147	150	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	103	105	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	94	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	124	125	anti-parallel
Strand 3	F	131	132	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	116	118	first strand
Strand 2	1	121	123	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	116	118	first strand
Strand 2	Z	121	123	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	222	223	first strand
Strand 2	6	228	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JO6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JO6