Analysis of interatomic Contacts of Structural Units in PDB entry:
6JO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JO7 entry

There are 2 chains in PDB entry 6JO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7THR 269
B
 SER 10THR 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6JO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
90 95Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
167 172Right-handed alpha
Helix 7
AA7
A
213 218Right-handed alpha
Helix 8
AA8
A
223 230Right-handed 310
Helix 9
AA9
A
240 244Right-handed 310
Helix 10
AB1
B
33 37Right-handed 310
Helix 11
AB2
B
78 82Right-handed 310
Helix 12
AB3
B
90 95Right-handed alpha
Helix 13
AB4
B
105 109Right-handed 310
Helix 14
AB5
B
136 140Right-handed 310
Helix 15
AB6
B
213 218Right-handed alpha
Helix 16
AB7
B
225 230Right-handed alpha
Helix 17
AB8
B
240 244Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6JO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
258 269parallel
Strand 3
A
245 253anti-parallel
Strand 4
A
181 187anti-parallel
Strand 5
A
197 203anti-parallel
Strand 6
A
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
234 236anti-parallel
Strand 3
A
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
48 54anti-parallel
Strand 4
A
110 118anti-parallel
Strand 5
A
123 134anti-parallel
Strand 6
A
149 154parallel
Strand 7
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
99 101anti-parallel
Strand 3
A
159 161anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
258 269parallel
Strand 3
B
245 253anti-parallel
Strand 4
B
181 187anti-parallel
Strand 5
B
197 203anti-parallel
Strand 6
B
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
234 236anti-parallel
Strand 3
B
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
62 69anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
110 118anti-parallel
Strand 5
B
124 134anti-parallel
Strand 6
B
149 154parallel
Strand 7
B
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
99 101anti-parallel
Strand 3
B
159 161anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il