Analysis of interatomic Contacts of Structural Units in PDB entry:
6JOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JOE entry

There are 2 chains in PDB entry 6JOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ASP 250
B
 GLN 2ASP 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6JOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 16Right-handed 310
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
23 32Right-handed alpha
Helix 4
AA4
A
41 46Right-handed 310
Helix 5
AA5
A
67 83Right-handed alpha
Helix 6
AA6
A
100 109Right-handed alpha
Helix 7
AA7
A
124 132Right-handed alpha
Helix 8
AA8
A
146 159Right-handed alpha
Helix 9
AA9
A
198 204Right-handed alpha
Helix 10
AB1
A
205 225Right-handed alpha
Helix 11
AB2
A
225 232Right-handed alpha
Helix 12
AB3
A
235 249Right-handed alpha
Helix 13
AB4
B
13 16Right-handed 310
Helix 14
AB5
B
17 22Right-handed alpha
Helix 15
AB6
B
23 32Right-handed alpha
Helix 16
AB7
B
41 45Right-handed 310
Helix 17
AB8
B
67 83Right-handed alpha
Helix 18
AB9
B
100 109Right-handed alpha
Helix 19
AC1
B
124 132Right-handed alpha
Helix 20
AC2
B
146 159Right-handed alpha
Helix 21
AC3
B
198 204Right-handed alpha
Helix 22
AC4
B
205 225Right-handed alpha
Helix 23
AC5
B
225 232Right-handed alpha
Helix 24
AC6
B
235 248Right-handed alpha
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There are 6 sheets in PDB entry 6JOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
5 10parallel
Strand 3
A
112 116parallel
Strand 4
A
87 92parallel
Strand 5
A
134 137parallel
Strand 6
A
97 98parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
65 66anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
195 196anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
5 10parallel
Strand 3
B
112 116parallel
Strand 4
B
87 92parallel
Strand 5
B
134 137parallel
Strand 6
B
97 98parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
65 66anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
195 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il