Analysis of interatomic Contacts of Structural Units in PDB entry:
6JOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JOM entry

There are 2 chains in PDB entry 6JOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 344
B
 MET 1LEU 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6JOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
53 58Right-handed alpha
Helix 3
AA3
A
59 67Right-handed alpha
Helix 4
AA4
A
96 99Right-handed 310
Helix 5
AA5
A
104 119Right-handed alpha
Helix 6
AA6
A
162 170Right-handed alpha
Helix 7
AA7
A
192 196Right-handed 310
Helix 8
AA8
A
197 201Right-handed 310
Helix 9
AA9
A
204 220Right-handed alpha
Helix 10
AB1
A
231 245Right-handed alpha
Helix 11
AB2
A
248 253Right-handed alpha
Helix 12
AB3
A
298 306Right-handed alpha
Helix 13
AB4
A
311 322Right-handed alpha
Helix 14
AB5
A
323 327Right-handed 310
Helix 15
AB6
A
333 342Right-handed alpha
Helix 16
AB7
B
15 30Right-handed alpha
Helix 17
AB8
B
53 58Right-handed alpha
Helix 18
AB9
B
59 67Right-handed alpha
Helix 19
AC1
B
96 99Right-handed 310
Helix 20
AC2
B
104 119Right-handed alpha
Helix 21
AC3
B
162 170Right-handed alpha
Helix 22
AC4
B
192 196Right-handed 310
Helix 23
AC5
B
197 201Right-handed 310
Helix 24
AC6
B
204 220Right-handed alpha
Helix 25
AC7
B
231 245Right-handed alpha
Helix 26
AC8
B
248 253Right-handed alpha
Helix 27
AC9
B
298 306Right-handed alpha
Helix 28
AD1
B
311 322Right-handed alpha
Helix 29
AD2
B
323 327Right-handed 310
Helix 30
AD3
B
333 343Right-handed alpha
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There are 8 sheets in PDB entry 6JOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
137 147anti-parallel
Strand 4
A
150 158anti-parallel
Strand 5
A
86 94anti-parallel
Strand 6
A
36 40anti-parallel
Strand 7
A
2 4parallel
Strand 8
A
226 228parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 12anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
45 48parallel
Strand 3
A
80 82anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 266first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
282 290anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
131 134anti-parallel
Strand 3
B
137 147anti-parallel
Strand 4
B
150 158anti-parallel
Strand 5
B
86 94anti-parallel
Strand 6
B
36 40anti-parallel
Strand 7
B
2 3parallel
Strand 8
B
226 227parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
11 12anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
45 48parallel
Strand 3
B
80 82anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 266first strand
Strand 2
B
271 279anti-parallel
Strand 3
B
282 290anti-parallel
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