Analysis of interatomic Contacts of Structural Units in PDB entry:
6JOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JOO entry

There are 4 chains in PDB entry 6JOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLN 1084
B
 G 1 A 113
D
 G 5 G 12
C
 C 1 C 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6JOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 84Right-handed alpha
Helix 2
AA2
A
98 108Right-handed alpha
Helix 3
AA3
A
114 132Right-handed alpha
Helix 4
AA4
A
141 146Right-handed 310
Helix 5
AA5
A
152 167Right-handed alpha
Helix 6
AA6
A
175 182Right-handed alpha
Helix 7
AA7
A
196 200Right-handed 310
Helix 8
AA8
A
202 217Right-handed alpha
Helix 9
AA9
A
220 232Right-handed alpha
Helix 10
AB1
A
237 242Right-handed 310
Helix 11
AB2
A
261 275Right-handed alpha
Helix 12
AB3
A
292 303Right-handed alpha
Helix 13
AB4
A
344 353Right-handed alpha
Helix 14
AB5
A
355 365Right-handed alpha
Helix 15
AB6
A
366 378Right-handed alpha
Helix 16
AB7
A
387 400Right-handed alpha
Helix 17
AB8
A
401 411Right-handed alpha
Helix 18
AB9
A
421 434Right-handed alpha
Helix 19
AC1
A
441 445Right-handed alpha
Helix 20
AC2
A
466 488Right-handed alpha
Helix 21
AC3
A
668 683Right-handed alpha
Helix 22
AC4
A
694 700Right-handed alpha
Helix 23
AC5
A
725 735Right-handed alpha
Helix 24
AC6
A
738 749Right-handed alpha
Helix 25
AC7
A
772 798Right-handed alpha
Helix 26
AC8
A
834 839Right-handed alpha
Helix 27
AC9
A
843 852Right-handed alpha
Helix 28
AD1
A
930 933Right-handed 310
Helix 29
AD2
A
939 943Right-handed 310
Helix 30
AD3
A
949 954Right-handed alpha
Helix 31
AD4
A
956 966Right-handed alpha
Helix 32
AD5
A
989 1000Right-handed alpha
Helix 33
AD6
A
1024 1028Right-handed 310
Helix 34
AD7
A
1033 1041Right-handed alpha
Helix 35
AD8
A
1048 1056Right-handed alpha
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There are 6 sheets in PDB entry 6JOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 693first strand
Strand 2
A
492 496parallel
Strand 3
A
3 9parallel
Strand 4
A
13 21anti-parallel
Strand 5
A
27 37anti-parallel
Strand 6
A
802 804parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 828first strand
Strand 2
A
882 885anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 872first strand
Strand 2
A
875 877anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
892 895first strand
Strand 2
A
898 901anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 928first strand
Strand 2
A
906 914anti-parallel
Strand 3
A
968 974anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1015 1020first strand
Strand 2
A
1004 1012anti-parallel
Strand 3
A
979 981anti-parallel
Strand 4
A
1059 1061anti-parallel
Strand 5
A
1081 1082anti-parallel
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