Analysis of interatomic Contacts of Structural Units in PDB entry:
6JOW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JOW entry

There are 2 chains in PDB entry 6JOW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 11	VAL 772
B	ARG 11	LEU 444

There are128 helices in PDB entry 6JOW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	25	27	Right-handed 310
Helix 3	AA3	A	28	39	Right-handed alpha
Helix 4	AA4	A	49	54	Right-handed alpha
Helix 5	AA5	A	67	70	Right-handed 310
Helix 6	AA6	A	71	82	Right-handed alpha
Helix 7	AA7	A	98	103	Right-handed 310
Helix 8	AA8	A	104	111	Right-handed alpha
Helix 9	AA9	A	112	115	Right-handed 310
Helix 10	AB1	A	136	158	Right-handed alpha
Helix 11	AB2	A	159	162	Right-handed 310
Helix 12	AB3	A	189	194	Right-handed alpha
Helix 13	AB4	A	197	207	Right-handed alpha
Helix 14	AB5	A	208	217	Right-handed alpha
Helix 15	AB6	A	222	226	Right-handed 310
Helix 16	AB7	A	235	263	Right-handed alpha
Helix 17	AB8	A	274	277	Right-handed 310
Helix 18	AB9	A	278	279	Right-handed 310
Helix 19	AC1	A	280	292	Right-handed alpha
Helix 20	AC2	A	312	314	Right-handed 310
Helix 21	AC3	A	315	334	Right-handed alpha
Helix 22	AC4	A	351	365	Right-handed alpha
Helix 23	AC5	A	407	421	Right-handed alpha
Helix 24	AC6	A	421	427	Right-handed alpha
Helix 25	AC7	A	438	448	Right-handed alpha
Helix 26	AC8	A	459	464	Right-handed alpha
Helix 27	AC9	A	469	477	Right-handed alpha
Helix 28	AD1	A	490	495	Right-handed alpha
Helix 29	AD2	A	509	522	Right-handed alpha
Helix 30	AD3	A	543	550	Right-handed alpha
Helix 31	AD4	A	561	565	Right-handed 310
Helix 32	AD5	A	627	640	Right-handed alpha
Helix 33	AD6	B	20	24	Right-handed 310
Helix 34	AD7	B	25	27	Right-handed 310
Helix 35	AD8	B	28	39	Right-handed alpha
Helix 36	AD9	B	49	54	Right-handed alpha
Helix 37	AE1	B	67	70	Right-handed 310
Helix 38	AE2	B	71	83	Right-handed alpha
Helix 39	AE3	B	98	103	Right-handed 310
Helix 40	AE4	B	104	111	Right-handed alpha
Helix 41	AE5	B	112	115	Right-handed 310
Helix 42	AE6	B	136	157	Right-handed alpha
Helix 43	AE7	B	158	162	Right-handed 310
Helix 44	AE8	B	189	194	Right-handed alpha
Helix 45	AE9	B	197	207	Right-handed alpha
Helix 46	AF1	B	208	217	Right-handed alpha
Helix 47	AF2	B	222	226	Right-handed 310
Helix 48	AF3	B	235	263	Right-handed alpha
Helix 49	AF4	B	274	277	Right-handed 310
Helix 50	AF5	B	278	279	Right-handed 310
Helix 51	AF6	B	280	292	Right-handed alpha
Helix 52	AF7	B	312	314	Right-handed 310
Helix 53	AF8	B	315	334	Right-handed alpha
Helix 54	AF9	B	351	365	Right-handed alpha
Helix 55	AG1	B	407	421	Right-handed alpha
Helix 56	AG2	B	421	426	Right-handed alpha
Helix 57	AG3	B	438	448	Right-handed alpha
Helix 58	AG4	B	459	464	Right-handed alpha
Helix 59	AG5	B	469	477	Right-handed alpha
Helix 60	AG6	B	490	495	Right-handed alpha
Helix 61	AG7	B	509	522	Right-handed alpha
Helix 62	AG8	B	543	550	Right-handed alpha
Helix 63	AG9	B	561	565	Right-handed 310
Helix 64	AH1	B	627	641	Right-handed alpha
Helix 65	AH2	C	20	24	Right-handed 310
Helix 66	AH3	C	25	27	Right-handed 310
Helix 67	AH4	C	28	39	Right-handed alpha
Helix 68	AH5	C	49	54	Right-handed alpha
Helix 69	AH6	C	67	70	Right-handed 310
Helix 70	AH7	C	71	82	Right-handed alpha
Helix 71	AH8	C	98	103	Right-handed 310
Helix 72	AH9	C	104	111	Right-handed alpha
Helix 73	AI1	C	112	115	Right-handed 310
Helix 74	AI2	C	136	157	Right-handed alpha
Helix 75	AI3	C	158	162	Right-handed 310
Helix 76	AI4	C	189	194	Right-handed alpha
Helix 77	AI5	C	197	207	Right-handed alpha
Helix 78	AI6	C	208	217	Right-handed alpha
Helix 79	AI7	C	222	226	Right-handed 310
Helix 80	AI8	C	235	263	Right-handed alpha
Helix 81	AI9	C	274	277	Right-handed 310
Helix 82	AJ1	C	278	279	Right-handed 310
Helix 83	AJ2	C	280	291	Right-handed alpha
Helix 84	AJ3	C	312	314	Right-handed 310
Helix 85	AJ4	C	315	334	Right-handed alpha
Helix 86	AJ5	C	351	365	Right-handed alpha
Helix 87	AJ6	C	407	421	Right-handed alpha
Helix 88	AJ7	C	421	427	Right-handed alpha
Helix 89	AJ8	C	438	448	Right-handed alpha
Helix 90	AJ9	C	459	464	Right-handed alpha
Helix 91	AK1	C	469	477	Right-handed alpha
Helix 92	AK2	C	490	495	Right-handed alpha
Helix 93	AK3	C	509	522	Right-handed alpha
Helix 94	AK4	C	543	550	Right-handed alpha
Helix 95	AK5	C	561	565	Right-handed 310
Helix 96	AK6	C	627	640	Right-handed alpha
Helix 97	AK7	D	20	24	Right-handed 310
Helix 98	AK8	D	25	27	Right-handed 310
Helix 99	AK9	D	28	39	Right-handed alpha
Helix 100	AL1	D	49	54	Right-handed alpha
Helix 101	AL2	D	67	70	Right-handed 310
Helix 102	AL3	D	71	82	Right-handed alpha
Helix 103	AL4	D	98	103	Right-handed 310
Helix 104	AL5	D	104	111	Right-handed alpha
Helix 105	AL6	D	112	115	Right-handed 310
Helix 106	AL7	D	136	157	Right-handed alpha
Helix 107	AL8	D	158	162	Right-handed 310
Helix 108	AL9	D	189	194	Right-handed alpha
Helix 109	AM1	D	197	207	Right-handed alpha
Helix 110	AM2	D	208	217	Right-handed alpha
Helix 111	AM3	D	222	226	Right-handed 310
Helix 112	AM4	D	235	263	Right-handed alpha
Helix 113	AM5	D	274	277	Right-handed 310
Helix 114	AM6	D	278	279	Right-handed 310
Helix 115	AM7	D	280	291	Right-handed alpha
Helix 116	AM8	D	312	314	Right-handed 310
Helix 117	AM9	D	315	334	Right-handed alpha
Helix 118	AN1	D	351	365	Right-handed alpha
Helix 119	AN2	D	407	419	Right-handed alpha
Helix 120	AN3	D	421	427	Right-handed alpha
Helix 121	AN4	D	438	448	Right-handed alpha
Helix 122	AN5	D	459	464	Right-handed alpha
Helix 123	AN6	D	469	477	Right-handed alpha
Helix 124	AN7	D	490	495	Right-handed alpha
Helix 125	AN8	D	509	522	Right-handed alpha
Helix 126	AN9	D	543	550	Right-handed alpha
Helix 127	AO1	D	561	565	Right-handed 310
Helix 128	AO2	D	627	640	Right-handed alpha

There are 36 sheets in PDB entry 6JOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	43	47	parallel
Strand 3	A	85	89	parallel
Strand 4	A	165	169	parallel
Strand 5	A	269	272	parallel
Strand 6	A	295	301	parallel
Strand 7	A	339	343	parallel
Strand 8	A	370	373	parallel
Strand 9	A	15	18	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	121	122	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	391	392	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	485	first strand
Strand 2	A	433	437	parallel
Strand 3	A	499	503	parallel
Strand 4	A	525	529	parallel
Strand 5	A	610	615	parallel
Strand 6	A	599	607	anti-parallel
Strand 7	A	591	596	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	A	587	588	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	572	first strand
Strand 2	A	575	581	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	672	678	anti-parallel
Strand 3	A	681	687	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	658	first strand
Strand 2	A	661	666	anti-parallel
Strand 3	A	691	701	anti-parallel
Strand 4	A	704	709	anti-parallel
Strand 5	A	730	735	anti-parallel
Strand 6	A	756	763	anti-parallel
Strand 7	A	745	753	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	717	first strand
Strand 2	A	720	724	anti-parallel
Strand 3	A	767	771	anti-parallel
Strand 4	A	741	743	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	43	47	parallel
Strand 3	B	85	89	parallel
Strand 4	B	165	169	parallel
Strand 5	B	269	272	parallel
Strand 6	B	295	301	parallel
Strand 7	B	339	343	parallel
Strand 8	B	370	373	parallel
Strand 9	B	15	18	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	121	122	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	379	first strand
Strand 2	B	391	392	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	485	first strand
Strand 2	B	433	437	parallel
Strand 3	B	499	503	parallel
Strand 4	B	525	529	parallel
Strand 5	B	610	615	parallel
Strand 6	B	599	607	anti-parallel
Strand 7	B	591	596	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	587	588	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	572	first strand
Strand 2	B	575	581	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	672	678	anti-parallel
Strand 3	B	681	687	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	658	first strand
Strand 2	B	661	666	anti-parallel
Strand 3	B	691	701	anti-parallel
Strand 4	B	704	709	anti-parallel
Strand 5	B	730	736	anti-parallel
Strand 6	B	756	763	anti-parallel
Strand 7	B	745	753	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	717	first strand
Strand 2	B	720	724	anti-parallel
Strand 3	B	767	771	anti-parallel
Strand 4	B	741	743	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	43	47	parallel
Strand 3	C	85	89	parallel
Strand 4	C	165	169	parallel
Strand 5	C	269	272	parallel
Strand 6	C	295	301	parallel
Strand 7	C	339	343	parallel
Strand 8	C	370	373	parallel
Strand 9	C	15	18	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	121	122	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	391	392	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	485	first strand
Strand 2	C	433	437	parallel
Strand 3	C	499	503	parallel
Strand 4	C	525	529	parallel
Strand 5	C	610	615	parallel
Strand 6	C	599	607	anti-parallel
Strand 7	C	591	596	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	552	553	first strand
Strand 2	C	587	588	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	572	first strand
Strand 2	C	575	581	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	647	648	first strand
Strand 2	C	672	678	anti-parallel
Strand 3	C	681	687	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	658	first strand
Strand 2	C	661	666	anti-parallel
Strand 3	C	691	701	anti-parallel
Strand 4	C	704	709	anti-parallel
Strand 5	C	730	735	anti-parallel
Strand 6	C	756	762	anti-parallel
Strand 7	C	746	753	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	717	first strand
Strand 2	C	720	724	anti-parallel
Strand 3	C	767	771	anti-parallel
Strand 4	C	741	743	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	43	47	parallel
Strand 3	D	85	89	parallel
Strand 4	D	165	169	parallel
Strand 5	D	269	272	parallel
Strand 6	D	295	301	parallel
Strand 7	D	339	343	parallel
Strand 8	D	370	373	parallel
Strand 9	D	15	18	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	121	122	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	379	first strand
Strand 2	D	391	392	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	485	first strand
Strand 2	D	433	437	parallel
Strand 3	D	499	503	parallel
Strand 4	D	525	529	parallel
Strand 5	D	610	615	parallel
Strand 6	D	599	607	anti-parallel
Strand 7	D	591	596	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	553	first strand
Strand 2	D	587	588	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	567	572	first strand
Strand 2	D	575	581	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	647	648	first strand
Strand 2	D	672	678	anti-parallel
Strand 3	D	681	687	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	658	first strand
Strand 2	D	661	666	anti-parallel
Strand 3	D	691	701	anti-parallel
Strand 4	D	704	709	anti-parallel
Strand 5	D	730	736	anti-parallel
Strand 6	D	759	762	anti-parallel
Strand 7	D	746	750	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	717	first strand
Strand 2	D	720	724	anti-parallel
Strand 3	D	767	771	anti-parallel
Strand 4	D	741	743	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JOW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JOW