Analysis of interatomic Contacts of Structural Units in PDB entry:
6JOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JOX entry

There are 2 chains in PDB entry 6JOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 4ALA 248
A
 GLN 4ALA 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6JOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 30Right-handed alpha
Helix 2
AA2
B
44 46Right-handed 310
Helix 3
AA3
B
47 55Right-handed alpha
Helix 4
AA4
B
79 86Right-handed alpha
Helix 5
AA5
B
95 101Right-handed alpha
Helix 6
AA6
B
105 120Right-handed alpha
Helix 7
AA7
B
130 136Right-handed alpha
Helix 8
AA8
B
138 151Right-handed alpha
Helix 9
AA9
B
152 154Right-handed 310
Helix 10
AB1
B
156 160Right-handed 310
Helix 11
AB2
B
166 170Right-handed 310
Helix 12
AB3
B
177 196Right-handed alpha
Helix 13
AB4
B
197 204Right-handed alpha
Helix 14
AB5
B
216 222Right-handed alpha
Helix 15
AB6
B
232 237Right-handed 310
Helix 16
AB7
B
238 245Right-handed alpha
Helix 17
AB8
A
18 30Right-handed alpha
Helix 18
AB9
A
44 46Right-handed 310
Helix 19
AC1
A
47 55Right-handed alpha
Helix 20
AC2
A
79 86Right-handed alpha
Helix 21
AC3
A
95 101Right-handed alpha
Helix 22
AC4
A
105 120Right-handed alpha
Helix 23
AC5
A
130 136Right-handed alpha
Helix 24
AC6
A
138 151Right-handed alpha
Helix 25
AC7
A
152 154Right-handed 310
Helix 26
AC8
A
156 160Right-handed 310
Helix 27
AC9
A
166 170Right-handed 310
Helix 28
AD1
A
177 196Right-handed alpha
Helix 29
AD2
A
197 204Right-handed alpha
Helix 30
AD3
A
216 222Right-handed alpha
Helix 31
AD4
A
232 237Right-handed 310
Helix 32
AD5
A
238 245Right-handed alpha
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There are 2 sheets in PDB entry 6JOX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
37 43parallel
Strand 3
B
60 63parallel
Strand 4
B
90 93parallel
Strand 5
B
122 127parallel
Strand 6
B
162 164parallel
Strand 7
B
206 208parallel
Strand 8
B
228 231parallel
Strand 9
B
7 12parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
37 42parallel
Strand 3
A
60 63parallel
Strand 4
A
90 93parallel
Strand 5
A
122 127parallel
Strand 6
A
162 164parallel
Strand 7
A
206 208parallel
Strand 8
A
228 231parallel
Strand 9
A
7 12parallel
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