Analysis of interatomic Contacts of Structural Units in PDB entry:
6JOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JOY entry

There is 1 chain in PDB entry 6JOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 621
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6JOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
19 23Right-handed 310
Helix 3
AA3
A
127 134Right-handed alpha
Helix 4
AA4
A
138 142Right-handed 310
Helix 5
AA5
A
150 154Right-handed 310
Helix 6
AA6
A
164 180Right-handed alpha
Helix 7
AA7
A
194 198Right-handed 310
Helix 8
AA8
A
214 228Right-handed alpha
Helix 9
AA9
A
279 297Right-handed alpha
Helix 10
AB1
A
306 312Right-handed alpha
Helix 11
AB2
A
330 348Right-handed alpha
Helix 12
AB3
A
367 371Right-handed 310
Helix 13
AB4
A
380 393Right-handed alpha
Helix 14
AB5
A
394 400Right-handed 310
Helix 15
AB6
A
401 407Right-handed alpha
Helix 16
AB7
A
407 412Right-handed alpha
Helix 17
AB8
A
422 427Right-handed 310
Helix 18
AB9
A
432 437Right-handed alpha
Helix 19
AC1
A
440 458Right-handed alpha
Helix 20
AC2
A
467 471Right-handed 310
Helix 21
AC3
A
483 488Right-handed 310
Helix 22
AC4
A
489 509Right-handed alpha
Helix 23
AC5
A
510 513Right-handed 310
Helix 24
AC6
A
516 518Right-handed 310
Helix 25
AC7
A
576 580Right-handed 310
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There are 5 sheets in PDB entry 6JOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
60 63anti-parallel
Strand 5
A
44 49anti-parallel
Strand 6
A
81 88anti-parallel
Strand 7
A
91 95anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
60 63anti-parallel
Strand 5
A
44 49anti-parallel
Strand 6
A
81 88anti-parallel
Strand 7
A
114 117anti-parallel
Strand 8
A
103 107anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
183 186parallel
Strand 3
A
231 236parallel
Strand 4
A
301 304parallel
Strand 5
A
352 355parallel
Strand 6
A
377 379parallel
Strand 7
A
417 421parallel
Strand 8
A
461 465parallel
Strand 9
A
145 149parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 524first strand
Strand 2
A
532 538anti-parallel
Strand 3
A
543 549anti-parallel
Strand 4
A
613 618anti-parallel
Strand 5
A
567 573anti-parallel
Strand 6
A
590 591anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 562first strand
Strand 2
A
602 608anti-parallel
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