Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JP2 entry

There are 4 chains in PDB entry 6JP2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	ASN 275
B	MET 1	ASN 275
C	HIS 0	ASN 275
D	HIS 0	ASN 275

There are 40 helices in PDB entry 6JP2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	17	Right-handed alpha
Helix 2	AA2	A	20	24	Right-handed 310
Helix 3	AA3	A	28	57	Right-handed alpha
Helix 4	AA4	A	61	77	Right-handed alpha
Helix 5	AA5	A	90	96	Right-handed alpha
Helix 6	AA6	A	102	108	Right-handed 310
Helix 7	AA7	A	121	134	Right-handed alpha
Helix 8	AA8	A	175	191	Right-handed alpha
Helix 9	AA9	A	230	234	Right-handed 310
Helix 10	AB1	A	246	255	Right-handed alpha
Helix 11	AB2	B	6	17	Right-handed alpha
Helix 12	AB3	B	20	23	Right-handed 310
Helix 13	AB4	B	28	57	Right-handed alpha
Helix 14	AB5	B	61	77	Right-handed alpha
Helix 15	AB6	B	90	96	Right-handed alpha
Helix 16	AB7	B	102	108	Right-handed 310
Helix 17	AB8	B	121	134	Right-handed alpha
Helix 18	AB9	B	175	191	Right-handed alpha
Helix 19	AC1	B	230	234	Right-handed 310
Helix 20	AC2	B	246	255	Right-handed alpha
Helix 21	AC3	C	6	17	Right-handed alpha
Helix 22	AC4	C	28	57	Right-handed alpha
Helix 23	AC5	C	61	77	Right-handed alpha
Helix 24	AC6	C	90	96	Right-handed alpha
Helix 25	AC7	C	102	108	Right-handed 310
Helix 26	AC8	C	121	134	Right-handed alpha
Helix 27	AC9	C	175	191	Right-handed alpha
Helix 28	AD1	C	230	234	Right-handed 310
Helix 29	AD2	C	246	255	Right-handed alpha
Helix 30	AD3	D	6	17	Right-handed alpha
Helix 31	AD4	D	32	36	Right-handed alpha
Helix 32	AD5	D	36	57	Right-handed alpha
Helix 33	AD6	D	61	76	Right-handed alpha
Helix 34	AD7	D	90	96	Right-handed alpha
Helix 35	AD8	D	102	108	Right-handed 310
Helix 36	AD9	D	121	134	Right-handed alpha
Helix 37	AE1	D	151	156	Right-handed alpha
Helix 38	AE2	D	176	191	Right-handed alpha
Helix 39	AE3	D	230	234	Right-handed 310
Helix 40	AE4	D	246	255	Right-handed alpha

There are 14 sheets in PDB entry 6JP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	140	149	parallel
Strand 3	A	161	170	anti-parallel
Strand 4	A	239	245	anti-parallel
Strand 5	A	217	224	anti-parallel
Strand 6	A	208	214	anti-parallel
Strand 7	A	197	201	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	115	117	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	272	273	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	25	26	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	140	149	parallel
Strand 3	B	161	170	anti-parallel
Strand 4	B	239	245	anti-parallel
Strand 5	B	217	224	anti-parallel
Strand 6	B	210	214	anti-parallel
Strand 7	B	197	199	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	115	117	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	272	273	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	25	26	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	140	149	parallel
Strand 3	C	161	170	anti-parallel
Strand 4	C	239	245	anti-parallel
Strand 5	C	217	224	anti-parallel
Strand 6	C	208	214	anti-parallel
Strand 7	C	197	201	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	115	117	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	272	273	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	140	149	parallel
Strand 3	D	161	170	anti-parallel
Strand 4	D	239	245	anti-parallel
Strand 5	D	217	224	anti-parallel
Strand 6	D	209	214	anti-parallel
Strand 7	D	197	199	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	115	117	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	272	273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JP2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP2