Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JP4 entry

There are 2 chains in PDB entry 6JP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLU 770
B	ALA 1	PRO 458

There are 91 helices in PDB entry 6JP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	31	Right-handed 310
Helix 2	AA2	A	32	39	Right-handed alpha
Helix 3	AA3	A	40	42	Right-handed 310
Helix 4	AA4	A	43	55	Right-handed alpha
Helix 5	AA5	A	56	60	Right-handed 310
Helix 6	AA6	A	73	99	Right-handed alpha
Helix 7	AA7	A	100	113	Right-handed alpha
Helix 8	AA8	A	118	122	Right-handed 310
Helix 9	AA9	A	132	151	Right-handed alpha
Helix 10	AB1	A	152	154	Right-handed 310
Helix 11	AB2	A	155	181	Right-handed alpha
Helix 12	AB3	A	185	202	Right-handed alpha
Helix 13	AB4	A	207	226	Right-handed alpha
Helix 14	AB5	A	236	259	Right-handed alpha
Helix 15	AB6	A	262	277	Right-handed alpha
Helix 16	AB7	A	295	303	Right-handed 310
Helix 17	AB8	A	315	326	Right-handed alpha
Helix 18	AB9	A	329	333	Right-handed 310
Helix 19	AC1	A	346	355	Right-handed alpha
Helix 20	AC2	A	435	441	Right-handed alpha
Helix 21	AC3	A	444	448	Right-handed 310
Helix 22	AC4	A	511	514	Right-handed 310
Helix 23	AC5	A	569	573	Right-handed 310
Helix 24	AC6	B	29	31	Right-handed 310
Helix 25	AC7	B	32	39	Right-handed alpha
Helix 26	AC8	B	40	42	Right-handed 310
Helix 27	AC9	B	43	54	Right-handed alpha
Helix 28	AD1	B	55	60	Right-handed 310
Helix 29	AD2	B	73	99	Right-handed alpha
Helix 30	AD3	B	100	113	Right-handed alpha
Helix 31	AD4	B	118	122	Right-handed 310
Helix 32	AD5	B	132	151	Right-handed alpha
Helix 33	AD6	B	152	154	Right-handed 310
Helix 34	AD7	B	155	181	Right-handed alpha
Helix 35	AD8	B	185	202	Right-handed alpha
Helix 36	AD9	B	207	226	Right-handed alpha
Helix 37	AE1	B	236	259	Right-handed alpha
Helix 38	AE2	B	262	277	Right-handed alpha
Helix 39	AE3	B	295	303	Right-handed 310
Helix 40	AE4	B	315	326	Right-handed alpha
Helix 41	AE5	B	329	333	Right-handed 310
Helix 42	AE6	B	346	355	Right-handed alpha
Helix 43	AE7	B	435	441	Right-handed alpha
Helix 44	AE8	B	444	448	Right-handed 310
Helix 45	AE9	B	511	514	Right-handed 310
Helix 46	AF1	B	569	573	Right-handed 310
Helix 47	AF2	C	29	31	Right-handed 310
Helix 48	AF3	C	32	39	Right-handed alpha
Helix 49	AF4	C	40	42	Right-handed 310
Helix 50	AF5	C	43	55	Right-handed alpha
Helix 51	AF6	C	56	60	Right-handed 310
Helix 52	AF7	C	73	99	Right-handed alpha
Helix 53	AF8	C	100	113	Right-handed alpha
Helix 54	AF9	C	118	122	Right-handed 310
Helix 55	AG1	C	132	151	Right-handed alpha
Helix 56	AG2	C	152	154	Right-handed 310
Helix 57	AG3	C	155	181	Right-handed alpha
Helix 58	AG4	C	185	202	Right-handed alpha
Helix 59	AG5	C	207	226	Right-handed alpha
Helix 60	AG6	C	236	259	Right-handed alpha
Helix 61	AG7	C	262	277	Right-handed alpha
Helix 62	AG8	C	295	303	Right-handed 310
Helix 63	AG9	C	315	326	Right-handed alpha
Helix 64	AH1	C	329	333	Right-handed 310
Helix 65	AH2	C	346	355	Right-handed alpha
Helix 66	AH3	C	435	441	Right-handed alpha
Helix 67	AH4	C	444	448	Right-handed 310
Helix 68	AH5	C	511	514	Right-handed 310
Helix 69	AH6	C	569	573	Right-handed 310
Helix 70	AH7	D	29	31	Right-handed 310
Helix 71	AH8	D	32	39	Right-handed alpha
Helix 72	AH9	D	40	42	Right-handed 310
Helix 73	AI1	D	43	54	Right-handed alpha
Helix 74	AI2	D	55	60	Right-handed 310
Helix 75	AI3	D	73	99	Right-handed alpha
Helix 76	AI4	D	100	113	Right-handed alpha
Helix 77	AI5	D	118	122	Right-handed 310
Helix 78	AI6	D	132	151	Right-handed alpha
Helix 79	AI7	D	152	154	Right-handed 310
Helix 80	AI8	D	155	181	Right-handed alpha
Helix 81	AI9	D	185	202	Right-handed alpha
Helix 82	AJ1	D	207	226	Right-handed alpha
Helix 83	AJ2	D	236	259	Right-handed alpha
Helix 84	AJ3	D	262	277	Right-handed alpha
Helix 85	AJ4	D	295	304	Right-handed 310
Helix 86	AJ5	D	315	326	Right-handed alpha
Helix 87	AJ6	D	329	333	Right-handed 310
Helix 88	AJ7	D	346	355	Right-handed alpha
Helix 89	AJ8	D	435	441	Right-handed alpha
Helix 90	AJ9	D	444	448	Right-handed 310
Helix 91	AK1	D	511	514	Right-handed 310

There are 20 sheets in PDB entry 6JP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	372	first strand
Strand 2	A	377	381	anti-parallel
Strand 3	A	392	397	anti-parallel
Strand 4	A	412	417	anti-parallel
Strand 5	A	420	421	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	528	535	anti-parallel
Strand 3	A	590	601	anti-parallel
Strand 4	A	574	582	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	473	first strand
Strand 2	A	480	486	anti-parallel
Strand 3	A	502	509	anti-parallel
Strand 4	A	516	524	anti-parallel
Strand 5	A	604	613	anti-parallel
Strand 6	A	561	568	anti-parallel
Strand 7	A	547	552	anti-parallel
Strand 8	A	540	542	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	624	first strand
Strand 2	A	631	637	anti-parallel
Strand 3	A	640	646	anti-parallel
Strand 4	A	664	669	anti-parallel
Strand 5	A	675	688	anti-parallel
Strand 6	A	691	705	anti-parallel
Strand 7	A	711	716	anti-parallel
Strand 8	A	762	768	anti-parallel
Strand 9	A	735	740	anti-parallel
Strand 10	A	743	745	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	655	first strand
Strand 2	A	658	660	anti-parallel
Strand 3	A	675	688	anti-parallel
Strand 4	A	691	705	anti-parallel
Strand 5	A	723	728	anti-parallel
Strand 6	A	753	758	anti-parallel
Strand 7	A	748	750	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	372	first strand
Strand 2	B	377	381	anti-parallel
Strand 3	B	392	397	anti-parallel
Strand 4	B	412	417	anti-parallel
Strand 5	B	420	421	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	528	535	anti-parallel
Strand 3	B	590	601	anti-parallel
Strand 4	B	574	582	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	473	first strand
Strand 2	B	480	486	anti-parallel
Strand 3	B	502	509	anti-parallel
Strand 4	B	516	524	anti-parallel
Strand 5	B	604	613	anti-parallel
Strand 6	B	561	568	anti-parallel
Strand 7	B	547	552	anti-parallel
Strand 8	B	540	542	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	624	first strand
Strand 2	B	630	637	anti-parallel
Strand 3	B	640	647	anti-parallel
Strand 4	B	664	669	anti-parallel
Strand 5	B	675	688	anti-parallel
Strand 6	B	691	705	anti-parallel
Strand 7	B	711	716	anti-parallel
Strand 8	B	762	768	anti-parallel
Strand 9	B	735	740	anti-parallel
Strand 10	B	743	744	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	655	first strand
Strand 2	B	658	660	anti-parallel
Strand 3	B	675	688	anti-parallel
Strand 4	B	691	705	anti-parallel
Strand 5	B	723	728	anti-parallel
Strand 6	B	753	758	anti-parallel
Strand 7	B	748	750	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	372	first strand
Strand 2	C	377	381	anti-parallel
Strand 3	C	392	397	anti-parallel
Strand 4	C	412	417	anti-parallel
Strand 5	C	420	421	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	528	535	anti-parallel
Strand 3	C	590	601	anti-parallel
Strand 4	C	574	582	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	468	473	first strand
Strand 2	C	480	486	anti-parallel
Strand 3	C	502	509	anti-parallel
Strand 4	C	516	524	anti-parallel
Strand 5	C	604	614	anti-parallel
Strand 6	C	561	568	anti-parallel
Strand 7	C	547	552	anti-parallel
Strand 8	C	540	542	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	621	624	first strand
Strand 2	C	630	637	anti-parallel
Strand 3	C	640	647	anti-parallel
Strand 4	C	664	669	anti-parallel
Strand 5	C	675	688	anti-parallel
Strand 6	C	691	705	anti-parallel
Strand 7	C	711	716	anti-parallel
Strand 8	C	762	768	anti-parallel
Strand 9	C	735	740	anti-parallel
Strand 10	C	743	744	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	655	first strand
Strand 2	C	658	660	anti-parallel
Strand 3	C	675	688	anti-parallel
Strand 4	C	691	705	anti-parallel
Strand 5	C	723	728	anti-parallel
Strand 6	C	753	758	anti-parallel
Strand 7	C	747	750	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	372	first strand
Strand 2	D	377	381	anti-parallel
Strand 3	D	392	397	anti-parallel
Strand 4	D	412	417	anti-parallel
Strand 5	D	420	421	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	453	first strand
Strand 2	D	528	535	anti-parallel
Strand 3	D	589	601	anti-parallel
Strand 4	D	574	583	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	473	first strand
Strand 2	D	480	486	anti-parallel
Strand 3	D	502	509	anti-parallel
Strand 4	D	516	524	anti-parallel
Strand 5	D	604	613	anti-parallel
Strand 6	D	561	568	anti-parallel
Strand 7	D	547	552	anti-parallel
Strand 8	D	540	542	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	621	624	first strand
Strand 2	D	630	637	anti-parallel
Strand 3	D	640	647	anti-parallel
Strand 4	D	664	669	anti-parallel
Strand 5	D	675	688	anti-parallel
Strand 6	D	691	705	anti-parallel
Strand 7	D	712	716	anti-parallel
Strand 8	D	762	768	anti-parallel
Strand 9	D	735	740	anti-parallel
Strand 10	D	743	744	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	653	655	first strand
Strand 2	D	658	660	anti-parallel
Strand 3	D	675	688	anti-parallel
Strand 4	D	691	705	anti-parallel
Strand 5	D	723	728	anti-parallel
Strand 6	D	753	758	anti-parallel
Strand 7	D	747	750	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP4