Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JP5 entry

There are 5 chains in PDB entry 6JP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 32	LEU 1506
E	MET 1	GLU 219
F	PHE 27	CYS 1074
B	GLN 75	GLN 174
C	VAL 265	SER 461

There are116 helices in PDB entry 6JP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed alpha
Helix 2	AA2	A	52	70	Right-handed alpha
Helix 3	AA3	A	74	78	Right-handed 310
Helix 4	AA4	A	88	101	Right-handed alpha
Helix 5	AA5	A	111	120	Right-handed alpha
Helix 6	AA6	A	120	144	Right-handed alpha
Helix 7	AA7	A	165	176	Right-handed 310
Helix 8	AA8	A	179	192	Right-handed alpha
Helix 9	AA9	A	193	195	Right-handed 310
Helix 10	AB1	A	196	219	Right-handed alpha
Helix 11	AB2	A	277	290	Right-handed alpha
Helix 12	AB3	A	293	306	Right-handed alpha
Helix 13	AB4	A	310	322	Right-handed alpha
Helix 14	AB5	A	322	346	Right-handed alpha
Helix 15	AB6	A	349	372	Right-handed alpha
Helix 16	AB7	A	419	431	Right-handed alpha
Helix 17	AB8	A	432	436	Right-handed 310
Helix 18	AB9	A	438	451	Right-handed alpha
Helix 19	AC1	A	457	486	Right-handed alpha
Helix 20	AC2	A	487	494	Right-handed alpha
Helix 21	AC3	A	496	514	Right-handed alpha
Helix 22	AC4	A	515	517	Right-handed 310
Helix 23	AC5	A	522	527	Right-handed alpha
Helix 24	AC6	A	529	542	Right-handed 310
Helix 25	AC7	A	547	555	Right-handed alpha
Helix 26	AC8	A	557	582	Right-handed alpha
Helix 27	AC9	A	599	612	Right-handed alpha
Helix 28	AD1	A	615	627	Right-handed alpha
Helix 29	AD2	A	636	647	Right-handed alpha
Helix 30	AD3	A	650	655	Right-handed alpha
Helix 31	AD4	A	655	663	Right-handed alpha
Helix 32	AD5	A	665	677	Right-handed alpha
Helix 33	AD6	A	678	687	Right-handed alpha
Helix 34	AD7	A	789	798	Right-handed alpha
Helix 35	AD8	A	798	806	Right-handed alpha
Helix 36	AD9	A	808	816	Right-handed alpha
Helix 37	AE1	A	826	832	Right-handed alpha
Helix 38	AE2	A	832	854	Right-handed alpha
Helix 39	AE3	A	869	883	Right-handed alpha
Helix 40	AE4	A	893	899	Right-handed alpha
Helix 41	AE5	A	902	911	Right-handed alpha
Helix 42	AE6	A	911	924	Right-handed alpha
Helix 43	AE7	A	930	951	Right-handed alpha
Helix 44	AE8	A	977	979	Right-handed 310
Helix 45	AE9	A	999	1012	Right-handed alpha
Helix 46	AF1	A	1015	1025	Right-handed alpha
Helix 47	AF2	A	1038	1040	Right-handed 310
Helix 48	AF3	A	1041	1052	Right-handed alpha
Helix 49	AF4	A	1057	1070	Right-handed alpha
Helix 50	AF5	A	1082	1095	Right-handed alpha
Helix 51	AF6	A	1105	1116	Right-handed alpha
Helix 52	AF7	A	1117	1125	Right-handed alpha
Helix 53	AF8	A	1127	1137	Right-handed alpha
Helix 54	AF9	A	1143	1173	Right-handed alpha
Helix 55	AG1	A	1180	1206	Right-handed alpha
Helix 56	AG2	A	1232	1239	Right-handed 310
Helix 57	AG3	A	1240	1248	Right-handed 310
Helix 58	AG4	A	1250	1266	Right-handed alpha
Helix 59	AG5	A	1267	1289	Right-handed alpha
Helix 60	AG6	A	1308	1322	Right-handed alpha
Helix 61	AG7	A	1324	1332	Right-handed alpha
Helix 62	AG8	A	1356	1381	Right-handed alpha
Helix 63	AG9	A	1383	1388	Right-handed alpha
Helix 64	AH1	A	1395	1407	Right-handed alpha
Helix 65	AH2	A	1422	1427	Right-handed alpha
Helix 66	AH3	A	1442	1451	Right-handed alpha
Helix 67	AH4	A	1463	1475	Right-handed alpha
Helix 68	AH5	A	1482	1493	Right-handed alpha
Helix 69	AH6	A	1500	1506	Right-handed alpha
Helix 70	AH7	E	7	27	Right-handed alpha
Helix 71	AH8	E	105	128	Right-handed alpha
Helix 72	AH9	E	136	165	Right-handed alpha
Helix 73	AI1	E	181	202	Right-handed alpha
Helix 74	AI2	F	29	38	Right-handed alpha
Helix 75	AI3	F	41	53	Right-handed alpha
Helix 76	AI4	F	53	65	Right-handed alpha
Helix 77	AI5	F	76	109	Right-handed alpha
Helix 78	AI6	F	178	188	Right-handed alpha
Helix 79	AI7	F	191	202	Right-handed alpha
Helix 80	AI8	F	243	251	Right-handed alpha
Helix 81	AI9	F	263	267	Right-handed 310
Helix 82	AJ1	F	268	284	Right-handed alpha
Helix 83	AJ2	F	313	324	Right-handed alpha
Helix 84	AJ3	F	334	347	Right-handed alpha
Helix 85	AJ4	F	371	379	Right-handed alpha
Helix 86	AJ5	F	398	408	Right-handed alpha
Helix 87	AJ6	F	417	421	Right-handed 310
Helix 88	AJ7	F	428	433	Right-handed alpha
Helix 89	AJ8	F	433	438	Right-handed alpha
Helix 90	AJ9	F	439	444	Right-handed 310
Helix 91	AK1	F	496	500	Right-handed alpha
Helix 92	AK2	F	542	546	Right-handed 310
Helix 93	AK3	F	562	567	Right-handed alpha
Helix 94	AK4	F	573	580	Right-handed alpha
Helix 95	AK5	F	640	647	Right-handed alpha
Helix 96	AK6	F	652	656	Right-handed 310
Helix 97	AK7	F	678	693	Right-handed alpha
Helix 98	AK8	F	701	713	Right-handed alpha
Helix 99	AK9	F	713	722	Right-handed alpha
Helix 100	AL1	F	750	754	Right-handed 310
Helix 101	AL2	F	764	773	Right-handed alpha
Helix 102	AL3	F	820	830	Right-handed alpha
Helix 103	AL4	F	877	881	Right-handed 310
Helix 104	AL5	F	882	892	Right-handed alpha
Helix 105	AL6	F	1024	1027	Right-handed 310
Helix 106	AL7	F	1045	1050	Right-handed alpha
Helix 107	AL8	B	78	95	Right-handed alpha
Helix 108	AL9	B	161	171	Right-handed alpha
Helix 109	AM1	C	287	304	Right-handed alpha
Helix 110	AM2	C	343	357	Right-handed alpha
Helix 111	AM3	C	374	378	Right-handed 310
Helix 112	AM4	C	393	402	Right-handed alpha
Helix 113	AM5	C	407	410	Right-handed 310
Helix 114	AM6	C	411	425	Right-handed alpha
Helix 115	AM7	C	426	430	Right-handed 310
Helix 116	AM8	C	438	458	Right-handed alpha

There are 19 sheets in PDB entry 6JP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	259	261	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1416	1417	first strand
Strand 2	A	1461	1462	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	79	81	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	144	145	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	447	448	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	452	453	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	290	296	anti-parallel
Strand 3	F	254	261	parallel
Strand 4	F	357	364	parallel
Strand 5	F	385	391	parallel
Strand 6	F	411	415	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	627	anti-parallel
Strand 4	F	602	613	anti-parallel
Strand 5	F	586	595	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	662	first strand
Strand 2	F	745	746	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	737	739	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	796	800	anti-parallel
Strand 4	F	777	779	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	865	first strand
Strand 2	F	851	856	anti-parallel
Strand 3	F	1017	1022	anti-parallel
Strand 4	F	1007	1010	anti-parallel
Strand 5	F	992	994	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	896	907	first strand
Strand 2	F	975	985	anti-parallel
Strand 3	F	1039	1040	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	997	998	first strand
Strand 2	F	1003	1004	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	133	139	anti-parallel
Strand 4	B	103	107	anti-parallel
Strand 5	C	268	271	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	313	first strand
Strand 2	C	363	367	parallel
Strand 3	C	276	280	parallel
Strand 4	C	385	389	parallel
Strand 5	C	432	434	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP5