Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JP8 entry

There are 5 chains in PDB entry 6JP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	MET 1	GLU 219
B	GLN 75	GLN 174
C	VAL 265	SER 461
A	PHE 32	LEU 1506
F	PHE 27	CYS 1074

There are114 helices in PDB entry 6JP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	7	27	Right-handed alpha
Helix 2	AA2	E	105	128	Right-handed alpha
Helix 3	AA3	E	136	165	Right-handed alpha
Helix 4	AA4	E	181	202	Right-handed alpha
Helix 5	AA5	B	78	95	Right-handed alpha
Helix 6	AA6	B	161	171	Right-handed alpha
Helix 7	AA7	C	287	304	Right-handed alpha
Helix 8	AA8	C	343	357	Right-handed alpha
Helix 9	AA9	C	374	378	Right-handed 310
Helix 10	AB1	C	393	402	Right-handed alpha
Helix 11	AB2	C	407	410	Right-handed 310
Helix 12	AB3	C	411	425	Right-handed alpha
Helix 13	AB4	C	426	430	Right-handed 310
Helix 14	AB5	C	438	458	Right-handed alpha
Helix 15	AB6	A	45	49	Right-handed 310
Helix 16	AB7	A	51	71	Right-handed alpha
Helix 17	AB8	A	80	86	Right-handed alpha
Helix 18	AB9	A	89	103	Right-handed alpha
Helix 19	AC1	A	110	115	Right-handed alpha
Helix 20	AC2	A	120	143	Right-handed alpha
Helix 21	AC3	A	164	175	Right-handed 310
Helix 22	AC4	A	179	181	Right-handed 310
Helix 23	AC5	A	182	192	Right-handed alpha
Helix 24	AC6	A	196	219	Right-handed alpha
Helix 25	AC7	A	277	290	Right-handed alpha
Helix 26	AC8	A	293	306	Right-handed alpha
Helix 27	AC9	A	310	321	Right-handed alpha
Helix 28	AD1	A	322	345	Right-handed alpha
Helix 29	AD2	A	349	372	Right-handed alpha
Helix 30	AD3	A	419	430	Right-handed alpha
Helix 31	AD4	A	433	437	Right-handed 310
Helix 32	AD5	A	438	451	Right-handed alpha
Helix 33	AD6	A	457	486	Right-handed alpha
Helix 34	AD7	A	487	494	Right-handed alpha
Helix 35	AD8	A	495	515	Right-handed alpha
Helix 36	AD9	A	522	527	Right-handed alpha
Helix 37	AE1	A	530	542	Right-handed 310
Helix 38	AE2	A	545	554	Right-handed alpha
Helix 39	AE3	A	555	582	Right-handed alpha
Helix 40	AE4	A	599	613	Right-handed alpha
Helix 41	AE5	A	615	626	Right-handed alpha
Helix 42	AE6	A	633	636	Right-handed 310
Helix 43	AE7	A	637	663	Right-handed alpha
Helix 44	AE8	A	665	674	Right-handed alpha
Helix 45	AE9	A	674	679	Right-handed alpha
Helix 46	AF1	A	681	686	Right-handed alpha
Helix 47	AF2	A	790	795	Right-handed alpha
Helix 48	AF3	A	801	818	Right-handed alpha
Helix 49	AF4	A	826	832	Right-handed alpha
Helix 50	AF5	A	838	852	Right-handed alpha
Helix 51	AF6	A	869	883	Right-handed alpha
Helix 52	AF7	A	893	897	Right-handed alpha
Helix 53	AF8	A	898	905	Right-handed 310
Helix 54	AF9	A	906	911	Right-handed alpha
Helix 55	AG1	A	911	951	Right-handed alpha
Helix 56	AG2	A	977	979	Right-handed 310
Helix 57	AG3	A	999	1012	Right-handed alpha
Helix 58	AG4	A	1015	1025	Right-handed alpha
Helix 59	AG5	A	1038	1040	Right-handed 310
Helix 60	AG6	A	1041	1052	Right-handed alpha
Helix 61	AG7	A	1054	1070	Right-handed alpha
Helix 62	AG8	A	1071	1073	Right-handed 310
Helix 63	AG9	A	1082	1095	Right-handed alpha
Helix 64	AH1	A	1105	1116	Right-handed alpha
Helix 65	AH2	A	1117	1137	Right-handed alpha
Helix 66	AH3	A	1143	1148	Right-handed alpha
Helix 67	AH4	A	1148	1172	Right-handed alpha
Helix 68	AH5	A	1174	1179	Right-handed alpha
Helix 69	AH6	A	1180	1206	Right-handed alpha
Helix 70	AH7	A	1236	1242	Right-handed alpha
Helix 71	AH8	A	1243	1249	Right-handed 310
Helix 72	AH9	A	1250	1267	Right-handed alpha
Helix 73	AI1	A	1267	1290	Right-handed alpha
Helix 74	AI2	A	1308	1322	Right-handed alpha
Helix 75	AI3	A	1324	1331	Right-handed alpha
Helix 76	AI4	A	1356	1383	Right-handed alpha
Helix 77	AI5	A	1383	1388	Right-handed alpha
Helix 78	AI6	A	1395	1408	Right-handed alpha
Helix 79	AI7	A	1418	1422	Right-handed 310
Helix 80	AI8	A	1446	1451	Right-handed alpha
Helix 81	AI9	A	1463	1472	Right-handed alpha
Helix 82	AJ1	F	29	38	Right-handed alpha
Helix 83	AJ2	F	41	53	Right-handed alpha
Helix 84	AJ3	F	53	65	Right-handed alpha
Helix 85	AJ4	F	76	109	Right-handed alpha
Helix 86	AJ5	F	178	188	Right-handed alpha
Helix 87	AJ6	F	191	202	Right-handed alpha
Helix 88	AJ7	F	243	251	Right-handed alpha
Helix 89	AJ8	F	263	267	Right-handed 310
Helix 90	AJ9	F	268	284	Right-handed alpha
Helix 91	AK1	F	313	324	Right-handed alpha
Helix 92	AK2	F	334	347	Right-handed alpha
Helix 93	AK3	F	371	379	Right-handed alpha
Helix 94	AK4	F	398	408	Right-handed alpha
Helix 95	AK5	F	417	421	Right-handed 310
Helix 96	AK6	F	428	433	Right-handed alpha
Helix 97	AK7	F	433	438	Right-handed alpha
Helix 98	AK8	F	439	444	Right-handed 310
Helix 99	AK9	F	496	500	Right-handed alpha
Helix 100	AL1	F	542	546	Right-handed 310
Helix 101	AL2	F	562	567	Right-handed alpha
Helix 102	AL3	F	573	580	Right-handed alpha
Helix 103	AL4	F	640	647	Right-handed alpha
Helix 104	AL5	F	652	656	Right-handed 310
Helix 105	AL6	F	678	693	Right-handed alpha
Helix 106	AL7	F	701	713	Right-handed alpha
Helix 107	AL8	F	713	722	Right-handed alpha
Helix 108	AL9	F	750	754	Right-handed 310
Helix 109	AM1	F	764	773	Right-handed alpha
Helix 110	AM2	F	820	830	Right-handed alpha
Helix 111	AM3	F	877	881	Right-handed 310
Helix 112	AM4	F	882	892	Right-handed alpha
Helix 113	AM5	F	1024	1027	Right-handed 310
Helix 114	AM6	F	1045	1050	Right-handed alpha

There are 20 sheets in PDB entry 6JP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	79	81	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	133	139	anti-parallel
Strand 4	B	103	107	anti-parallel
Strand 5	C	268	271	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	313	first strand
Strand 2	C	363	367	parallel
Strand 3	C	276	280	parallel
Strand 4	C	385	389	parallel
Strand 5	C	432	434	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	259	262	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	957	first strand
Strand 2	A	990	992	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1416	1417	first strand
Strand 2	A	1461	1462	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	144	145	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	447	448	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	452	453	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	290	296	anti-parallel
Strand 3	F	254	261	parallel
Strand 4	F	357	364	parallel
Strand 5	F	385	391	parallel
Strand 6	F	411	415	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	627	anti-parallel
Strand 4	F	602	613	anti-parallel
Strand 5	F	586	595	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	662	first strand
Strand 2	F	745	746	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	737	739	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	796	800	anti-parallel
Strand 4	F	777	779	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	865	first strand
Strand 2	F	851	856	anti-parallel
Strand 3	F	1017	1022	anti-parallel
Strand 4	F	1007	1010	anti-parallel
Strand 5	F	992	994	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	896	907	first strand
Strand 2	F	975	985	anti-parallel
Strand 3	F	1039	1040	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	997	998	first strand
Strand 2	F	1003	1004	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP8