Analysis of interatomic Contacts of Structural Units in PDB entry:
6JP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JP9 entry

There are 4 chains in PDB entry 6JP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 310
B
 PHE 2GLU 310
C
 ASP 3GLU 310
D
 MET 1GLU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6JP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
31 46Right-handed alpha
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
97 120Right-handed alpha
Helix 6
AA6
A
165 176Right-handed alpha
Helix 7
AA7
A
179 184Right-handed alpha
Helix 8
AA8
A
191 197Right-handed 310
Helix 9
AA9
A
202 223Right-handed alpha
Helix 10
AB1
A
274 289Right-handed alpha
Helix 11
AB2
B
3 20Right-handed alpha
Helix 12
AB3
B
31 46Right-handed alpha
Helix 13
AB4
B
62 72Right-handed alpha
Helix 14
AB5
B
84 93Right-handed alpha
Helix 15
AB6
B
97 120Right-handed alpha
Helix 16
AB7
B
165 176Right-handed alpha
Helix 17
AB8
B
179 184Right-handed alpha
Helix 18
AB9
B
191 197Right-handed 310
Helix 19
AC1
B
202 223Right-handed alpha
Helix 20
AC2
B
274 289Right-handed alpha
Helix 21
AC3
C
4 19Right-handed alpha
Helix 22
AC4
C
31 39Right-handed alpha
Helix 23
AC5
C
42 46Right-handed alpha
Helix 24
AC6
C
62 72Right-handed alpha
Helix 25
AC7
C
84 93Right-handed alpha
Helix 26
AC8
C
97 116Right-handed alpha
Helix 27
AC9
C
118 120Right-handed 310
Helix 28
AD1
C
165 176Right-handed alpha
Helix 29
AD2
C
179 184Right-handed alpha
Helix 30
AD3
C
191 197Right-handed 310
Helix 31
AD4
C
202 223Right-handed alpha
Helix 32
AD5
C
274 289Right-handed alpha
Helix 33
AD6
D
3 20Right-handed alpha
Helix 34
AD7
D
31 46Right-handed alpha
Helix 35
AD8
D
62 72Right-handed alpha
Helix 36
AD9
D
84 92Right-handed alpha
Helix 37
AE1
D
97 120Right-handed alpha
Helix 38
AE2
D
130 134Right-handed 310
Helix 39
AE3
D
165 176Right-handed alpha
Helix 40
AE4
D
179 184Right-handed alpha
Helix 41
AE5
D
191 196Right-handed 310
Helix 42
AE6
D
202 223Right-handed alpha
Helix 43
AE7
D
274 289Right-handed alpha
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There are 8 sheets in PDB entry 6JP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
49 55parallel
Strand 3
A
24 27parallel
Strand 4
A
124 126parallel
Strand 5
A
154 158parallel
Strand 6
A
146 148anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 243first strand
Strand 2
A
250 264anti-parallel
Strand 3
A
267 269anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 243first strand
Strand 2
A
250 264anti-parallel
Strand 3
A
292 298parallel
Strand 4
B
292 298anti-parallel
Strand 5
B
250 260parallel
Strand 6
B
231 243anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
49 55parallel
Strand 3
B
24 27parallel
Strand 4
B
124 126parallel
Strand 5
B
154 158parallel
Strand 6
B
146 148anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 55first strand
Strand 2
C
78 83parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 245first strand
Strand 2
C
248 264anti-parallel
Strand 3
C
267 269anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 245first strand
Strand 2
C
248 264anti-parallel
Strand 3
C
292 298parallel
Strand 4
D
292 298anti-parallel
Strand 5
D
251 260parallel
Strand 6
D
231 242anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 83first strand
Strand 2
D
49 55parallel
Strand 3
D
24 27parallel
Strand 4
D
124 126parallel
Strand 5
D
154 158parallel
Strand 6
D
146 148anti-parallel
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