Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JPA entry

There are 5 chains in PDB entry 6JPA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 32	LEU 1506
E	MET 1	GLU 219
B	GLN 75	GLN 174
C	VAL 265	SER 461
F	PHE 27	CYS 1074

There are111 helices in PDB entry 6JPA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed alpha
Helix 2	AA2	A	52	69	Right-handed alpha
Helix 3	AA3	A	74	78	Right-handed 310
Helix 4	AA4	A	80	101	Right-handed alpha
Helix 5	AA5	A	110	120	Right-handed alpha
Helix 6	AA6	A	120	144	Right-handed alpha
Helix 7	AA7	A	163	172	Right-handed 310
Helix 8	AA8	A	173	179	Right-handed alpha
Helix 9	AA9	A	179	193	Right-handed alpha
Helix 10	AB1	A	196	219	Right-handed alpha
Helix 11	AB2	A	277	290	Right-handed alpha
Helix 12	AB3	A	293	306	Right-handed alpha
Helix 13	AB4	A	309	320	Right-handed alpha
Helix 14	AB5	A	320	346	Right-handed alpha
Helix 15	AB6	A	349	376	Right-handed alpha
Helix 16	AB7	A	420	430	Right-handed alpha
Helix 17	AB8	A	433	437	Right-handed 310
Helix 18	AB9	A	438	452	Right-handed alpha
Helix 19	AC1	A	457	486	Right-handed alpha
Helix 20	AC2	A	487	494	Right-handed alpha
Helix 21	AC3	A	494	517	Right-handed alpha
Helix 22	AC4	A	522	530	Right-handed alpha
Helix 23	AC5	A	531	541	Right-handed 310
Helix 24	AC6	A	542	559	Right-handed alpha
Helix 25	AC7	A	559	582	Right-handed alpha
Helix 26	AC8	A	599	613	Right-handed alpha
Helix 27	AC9	A	615	626	Right-handed alpha
Helix 28	AD1	A	631	637	Right-handed alpha
Helix 29	AD2	A	637	677	Right-handed alpha
Helix 30	AD3	A	678	687	Right-handed alpha
Helix 31	AD4	A	790	798	Right-handed alpha
Helix 32	AD5	A	798	806	Right-handed alpha
Helix 33	AD6	A	808	816	Right-handed alpha
Helix 34	AD7	A	826	832	Right-handed alpha
Helix 35	AD8	A	832	854	Right-handed alpha
Helix 36	AD9	A	869	883	Right-handed alpha
Helix 37	AE1	A	893	899	Right-handed alpha
Helix 38	AE2	A	900	901	Right-handed 310
Helix 39	AE3	A	902	906	Right-handed 310
Helix 40	AE4	A	911	924	Right-handed alpha
Helix 41	AE5	A	929	951	Right-handed alpha
Helix 42	AE6	A	999	1012	Right-handed alpha
Helix 43	AE7	A	1015	1026	Right-handed alpha
Helix 44	AE8	A	1040	1071	Right-handed alpha
Helix 45	AE9	A	1082	1095	Right-handed alpha
Helix 46	AF1	A	1105	1117	Right-handed alpha
Helix 47	AF2	A	1117	1136	Right-handed alpha
Helix 48	AF3	A	1143	1171	Right-handed alpha
Helix 49	AF4	A	1180	1206	Right-handed alpha
Helix 50	AF5	A	1234	1238	Right-handed 310
Helix 51	AF6	A	1239	1249	Right-handed 310
Helix 52	AF7	A	1250	1262	Right-handed alpha
Helix 53	AF8	A	1267	1290	Right-handed alpha
Helix 54	AF9	A	1308	1321	Right-handed alpha
Helix 55	AG1	A	1324	1332	Right-handed alpha
Helix 56	AG2	A	1348	1352	Right-handed 310
Helix 57	AG3	A	1356	1382	Right-handed alpha
Helix 58	AG4	A	1383	1388	Right-handed alpha
Helix 59	AG5	A	1395	1407	Right-handed alpha
Helix 60	AG6	A	1422	1427	Right-handed alpha
Helix 61	AG7	A	1442	1451	Right-handed alpha
Helix 62	AG8	A	1463	1475	Right-handed alpha
Helix 63	AG9	A	1482	1493	Right-handed alpha
Helix 64	AH1	A	1500	1506	Right-handed alpha
Helix 65	AH2	E	7	27	Right-handed alpha
Helix 66	AH3	E	105	128	Right-handed alpha
Helix 67	AH4	E	136	165	Right-handed alpha
Helix 68	AH5	E	181	202	Right-handed alpha
Helix 69	AH6	B	78	95	Right-handed alpha
Helix 70	AH7	B	161	171	Right-handed alpha
Helix 71	AH8	C	287	304	Right-handed alpha
Helix 72	AH9	C	343	357	Right-handed alpha
Helix 73	AI1	C	374	378	Right-handed 310
Helix 74	AI2	C	393	402	Right-handed alpha
Helix 75	AI3	C	407	410	Right-handed 310
Helix 76	AI4	C	411	425	Right-handed alpha
Helix 77	AI5	C	426	430	Right-handed 310
Helix 78	AI6	C	438	458	Right-handed alpha
Helix 79	AI7	F	29	38	Right-handed alpha
Helix 80	AI8	F	41	53	Right-handed alpha
Helix 81	AI9	F	53	65	Right-handed alpha
Helix 82	AJ1	F	76	109	Right-handed alpha
Helix 83	AJ2	F	178	188	Right-handed alpha
Helix 84	AJ3	F	191	202	Right-handed alpha
Helix 85	AJ4	F	243	251	Right-handed alpha
Helix 86	AJ5	F	263	267	Right-handed 310
Helix 87	AJ6	F	268	284	Right-handed alpha
Helix 88	AJ7	F	313	324	Right-handed alpha
Helix 89	AJ8	F	336	347	Right-handed alpha
Helix 90	AJ9	F	371	379	Right-handed alpha
Helix 91	AK1	F	398	408	Right-handed alpha
Helix 92	AK2	F	417	421	Right-handed 310
Helix 93	AK3	F	428	433	Right-handed alpha
Helix 94	AK4	F	433	438	Right-handed alpha
Helix 95	AK5	F	439	444	Right-handed 310
Helix 96	AK6	F	496	500	Right-handed alpha
Helix 97	AK7	F	542	546	Right-handed 310
Helix 98	AK8	F	562	567	Right-handed alpha
Helix 99	AK9	F	573	580	Right-handed alpha
Helix 100	AL1	F	640	647	Right-handed alpha
Helix 101	AL2	F	652	656	Right-handed 310
Helix 102	AL3	F	678	693	Right-handed alpha
Helix 103	AL4	F	701	713	Right-handed alpha
Helix 104	AL5	F	713	722	Right-handed alpha
Helix 105	AL6	F	750	754	Right-handed 310
Helix 106	AL7	F	764	773	Right-handed alpha
Helix 107	AL8	F	820	830	Right-handed alpha
Helix 108	AL9	F	877	881	Right-handed 310
Helix 109	AM1	F	882	892	Right-handed alpha
Helix 110	AM2	F	1024	1027	Right-handed 310
Helix 111	AM3	F	1045	1050	Right-handed alpha

There are 20 sheets in PDB entry 6JPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	259	261	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	957	first strand
Strand 2	A	990	992	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1416	1417	first strand
Strand 2	A	1461	1462	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	79	81	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	133	139	anti-parallel
Strand 4	B	103	107	anti-parallel
Strand 5	C	268	271	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	313	first strand
Strand 2	C	363	367	parallel
Strand 3	C	276	279	parallel
Strand 4	C	385	389	parallel
Strand 5	C	432	434	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	144	145	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	447	448	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	452	453	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	290	296	anti-parallel
Strand 3	F	254	261	parallel
Strand 4	F	357	364	parallel
Strand 5	F	385	391	parallel
Strand 6	F	411	415	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	627	anti-parallel
Strand 4	F	602	613	anti-parallel
Strand 5	F	586	595	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	662	first strand
Strand 2	F	745	746	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	737	739	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	796	800	anti-parallel
Strand 4	F	777	779	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	865	first strand
Strand 2	F	851	856	anti-parallel
Strand 3	F	1017	1022	anti-parallel
Strand 4	F	1007	1010	anti-parallel
Strand 5	F	992	994	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	896	907	first strand
Strand 2	F	975	985	anti-parallel
Strand 3	F	1039	1040	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	997	998	first strand
Strand 2	F	1003	1004	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JPA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPA