Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JPB entry

There are 5 chains in PDB entry 6JPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 32	LEU 1506
E	MET 1	GLU 219
B	GLN 75	GLN 174
C	VAL 265	SER 461
F	PHE 27	CYS 1074

There are120 helices in PDB entry 6JPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	44	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	51	70	Right-handed alpha
Helix 4	AA4	A	80	85	Right-handed alpha
Helix 5	AA5	A	86	101	Right-handed alpha
Helix 6	AA6	A	113	120	Right-handed alpha
Helix 7	AA7	A	121	143	Right-handed alpha
Helix 8	AA8	A	163	171	Right-handed 310
Helix 9	AA9	A	173	179	Right-handed alpha
Helix 10	AB1	A	182	187	Right-handed alpha
Helix 11	AB2	A	188	193	Right-handed 310
Helix 12	AB3	A	196	208	Right-handed alpha
Helix 13	AB4	A	208	219	Right-handed alpha
Helix 14	AB5	A	277	290	Right-handed alpha
Helix 15	AB6	A	293	302	Right-handed alpha
Helix 16	AB7	A	310	322	Right-handed alpha
Helix 17	AB8	A	324	337	Right-handed alpha
Helix 18	AB9	A	341	346	Right-handed alpha
Helix 19	AC1	A	351	372	Right-handed alpha
Helix 20	AC2	A	420	430	Right-handed alpha
Helix 21	AC3	A	438	450	Right-handed alpha
Helix 22	AC4	A	457	485	Right-handed alpha
Helix 23	AC5	A	487	494	Right-handed alpha
Helix 24	AC6	A	496	514	Right-handed alpha
Helix 25	AC7	A	522	531	Right-handed alpha
Helix 26	AC8	A	532	542	Right-handed 310
Helix 27	AC9	A	547	554	Right-handed alpha
Helix 28	AD1	A	559	564	Right-handed alpha
Helix 29	AD2	A	564	581	Right-handed alpha
Helix 30	AD3	A	600	612	Right-handed alpha
Helix 31	AD4	A	615	627	Right-handed alpha
Helix 32	AD5	A	633	638	Right-handed 310
Helix 33	AD6	A	639	650	Right-handed alpha
Helix 34	AD7	A	655	687	Right-handed alpha
Helix 35	AD8	A	789	796	Right-handed alpha
Helix 36	AD9	A	798	807	Right-handed alpha
Helix 37	AE1	A	812	818	Right-handed alpha
Helix 38	AE2	A	826	840	Right-handed alpha
Helix 39	AE3	A	841	854	Right-handed alpha
Helix 40	AE4	A	868	882	Right-handed alpha
Helix 41	AE5	A	894	899	Right-handed alpha
Helix 42	AE6	A	900	903	Right-handed 310
Helix 43	AE7	A	904	908	Right-handed 310
Helix 44	AE8	A	911	927	Right-handed alpha
Helix 45	AE9	A	930	950	Right-handed alpha
Helix 46	AF1	A	977	979	Right-handed 310
Helix 47	AF2	A	999	1013	Right-handed alpha
Helix 48	AF3	A	1016	1025	Right-handed alpha
Helix 49	AF4	A	1038	1042	Right-handed 310
Helix 50	AF5	A	1043	1052	Right-handed alpha
Helix 51	AF6	A	1057	1068	Right-handed alpha
Helix 52	AF7	A	1082	1094	Right-handed alpha
Helix 53	AF8	A	1105	1116	Right-handed alpha
Helix 54	AF9	A	1117	1137	Right-handed alpha
Helix 55	AG1	A	1143	1171	Right-handed alpha
Helix 56	AG2	A	1176	1179	Right-handed 310
Helix 57	AG3	A	1180	1205	Right-handed alpha
Helix 58	AG4	A	1232	1239	Right-handed 310
Helix 59	AG5	A	1240	1249	Right-handed 310
Helix 60	AG6	A	1250	1266	Right-handed alpha
Helix 61	AG7	A	1269	1289	Right-handed alpha
Helix 62	AG8	A	1308	1322	Right-handed alpha
Helix 63	AG9	A	1324	1330	Right-handed alpha
Helix 64	AH1	A	1331	1333	Right-handed 310
Helix 65	AH2	A	1356	1381	Right-handed alpha
Helix 66	AH3	A	1395	1410	Right-handed alpha
Helix 67	AH4	A	1418	1427	Right-handed alpha
Helix 68	AH5	A	1443	1451	Right-handed alpha
Helix 69	AH6	A	1463	1475	Right-handed alpha
Helix 70	AH7	A	1488	1493	Right-handed alpha
Helix 71	AH8	A	1499	1504	Right-handed 310
Helix 72	AH9	E	6	27	Right-handed alpha
Helix 73	AI1	E	105	128	Right-handed alpha
Helix 74	AI2	E	136	164	Right-handed alpha
Helix 75	AI3	E	181	202	Right-handed alpha
Helix 76	AI4	B	78	95	Right-handed alpha
Helix 77	AI5	B	161	174	Right-handed alpha
Helix 78	AI6	C	287	296	Right-handed alpha
Helix 79	AI7	C	299	304	Right-handed alpha
Helix 80	AI8	C	343	358	Right-handed alpha
Helix 81	AI9	C	373	378	Right-handed 310
Helix 82	AJ1	C	393	402	Right-handed alpha
Helix 83	AJ2	C	407	410	Right-handed 310
Helix 84	AJ3	C	411	419	Right-handed alpha
Helix 85	AJ4	C	420	425	Right-handed alpha
Helix 86	AJ5	C	426	430	Right-handed 310
Helix 87	AJ6	C	438	458	Right-handed alpha
Helix 88	AJ7	F	29	38	Right-handed alpha
Helix 89	AJ8	F	41	53	Right-handed alpha
Helix 90	AJ9	F	53	65	Right-handed alpha
Helix 91	AK1	F	76	109	Right-handed alpha
Helix 92	AK2	F	178	188	Right-handed alpha
Helix 93	AK3	F	191	202	Right-handed alpha
Helix 94	AK4	F	243	251	Right-handed alpha
Helix 95	AK5	F	263	267	Right-handed 310
Helix 96	AK6	F	268	284	Right-handed alpha
Helix 97	AK7	F	313	324	Right-handed alpha
Helix 98	AK8	F	334	347	Right-handed alpha
Helix 99	AK9	F	371	379	Right-handed alpha
Helix 100	AL1	F	398	408	Right-handed alpha
Helix 101	AL2	F	417	421	Right-handed 310
Helix 102	AL3	F	428	433	Right-handed alpha
Helix 103	AL4	F	433	438	Right-handed alpha
Helix 104	AL5	F	439	444	Right-handed 310
Helix 105	AL6	F	496	500	Right-handed alpha
Helix 106	AL7	F	542	546	Right-handed 310
Helix 107	AL8	F	562	567	Right-handed alpha
Helix 108	AL9	F	573	580	Right-handed alpha
Helix 109	AM1	F	640	647	Right-handed alpha
Helix 110	AM2	F	652	656	Right-handed 310
Helix 111	AM3	F	678	693	Right-handed alpha
Helix 112	AM4	F	701	713	Right-handed alpha
Helix 113	AM5	F	713	722	Right-handed alpha
Helix 114	AM6	F	750	754	Right-handed 310
Helix 115	AM7	F	764	773	Right-handed alpha
Helix 116	AM8	F	820	830	Right-handed alpha
Helix 117	AM9	F	877	881	Right-handed 310
Helix 118	AN1	F	882	892	Right-handed alpha
Helix 119	AN2	F	1024	1027	Right-handed 310
Helix 120	AN3	F	1045	1050	Right-handed alpha

There are 19 sheets in PDB entry 6JPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	259	262	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	956	first strand
Strand 2	A	991	992	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	975	first strand
Strand 2	A	983	987	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	51	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	79	81	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	133	139	anti-parallel
Strand 4	B	103	106	anti-parallel
Strand 5	C	269	271	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	313	first strand
Strand 2	C	363	367	parallel
Strand 3	C	276	280	parallel
Strand 4	C	385	389	parallel
Strand 5	C	432	434	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	72	first strand
Strand 2	F	632	636	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	144	145	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	447	448	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	128	first strand
Strand 2	F	167	169	parallel
Strand 3	F	217	220	anti-parallel
Strand 4	F	208	212	anti-parallel
Strand 5	F	486	495	anti-parallel
Strand 6	F	460	469	anti-parallel
Strand 7	F	452	453	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	302	first strand
Strand 2	F	290	296	anti-parallel
Strand 3	F	254	261	parallel
Strand 4	F	357	364	parallel
Strand 5	F	385	391	parallel
Strand 6	F	411	415	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	523	525	first strand
Strand 2	F	513	517	anti-parallel
Strand 3	F	621	627	anti-parallel
Strand 4	F	602	613	anti-parallel
Strand 5	F	586	595	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	662	first strand
Strand 2	F	745	746	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	737	739	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	734	first strand
Strand 2	F	813	819	anti-parallel
Strand 3	F	796	800	anti-parallel
Strand 4	F	777	779	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	803	804	first strand
Strand 2	F	809	810	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	865	first strand
Strand 2	F	851	856	anti-parallel
Strand 3	F	1017	1022	anti-parallel
Strand 4	F	1007	1010	anti-parallel
Strand 5	F	992	994	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	896	907	first strand
Strand 2	F	975	985	anti-parallel
Strand 3	F	1039	1040	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	997	998	first strand
Strand 2	F	1003	1004	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPB