Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JPF entry

There are 2 chains in PDB entry 6JPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4VAL 717
B
 LEU 4VAL 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6JPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 31Right-handed alpha
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
71 74Right-handed 310
Helix 4
AA4
A
75 81Right-handed alpha
Helix 5
AA5
A
83 118Right-handed alpha
Helix 6
AA6
A
157 195Right-handed alpha
Helix 7
AA7
A
198 202Right-handed alpha
Helix 8
AA8
A
216 229Right-handed alpha
Helix 9
AA9
A
242 267Right-handed alpha
Helix 10
AB1
A
292 314Right-handed alpha
Helix 11
AB2
A
330 340Right-handed alpha
Helix 12
AB3
A
361 365Right-handed 310
Helix 13
AB4
A
372 388Right-handed alpha
Helix 14
AB5
A
390 402Right-handed alpha
Helix 15
AB6
A
423 439Right-handed alpha
Helix 16
AB7
A
441 453Right-handed alpha
Helix 17
AB8
A
457 476Right-handed alpha
Helix 18
AB9
A
478 491Right-handed alpha
Helix 19
AC1
A
509 524Right-handed alpha
Helix 20
AC2
A
526 535Right-handed alpha
Helix 21
AC3
A
535 548Right-handed alpha
Helix 22
AC4
A
566 585Right-handed alpha
Helix 23
AC5
A
591 613Right-handed alpha
Helix 24
AC6
A
624 648Right-handed alpha
Helix 25
AC7
A
654 682Right-handed alpha
Helix 26
AC8
A
685 700Right-handed alpha
Helix 27
AC9
A
704 713Right-handed alpha
Helix 28
AD1
B
5 31Right-handed alpha
Helix 29
AD2
B
34 39Right-handed alpha
Helix 30
AD3
B
71 74Right-handed 310
Helix 31
AD4
B
75 81Right-handed alpha
Helix 32
AD5
B
83 118Right-handed alpha
Helix 33
AD6
B
157 195Right-handed alpha
Helix 34
AD7
B
198 202Right-handed alpha
Helix 35
AD8
B
216 229Right-handed alpha
Helix 36
AD9
B
242 267Right-handed alpha
Helix 37
AE1
B
292 314Right-handed alpha
Helix 38
AE2
B
330 340Right-handed alpha
Helix 39
AE3
B
361 365Right-handed 310
Helix 40
AE4
B
372 388Right-handed alpha
Helix 41
AE5
B
390 402Right-handed alpha
Helix 42
AE6
B
423 439Right-handed alpha
Helix 43
AE7
B
441 453Right-handed alpha
Helix 44
AE8
B
457 476Right-handed alpha
Helix 45
AE9
B
478 491Right-handed alpha
Helix 46
AF1
B
509 524Right-handed alpha
Helix 47
AF2
B
526 535Right-handed alpha
Helix 48
AF3
B
535 548Right-handed alpha
Helix 49
AF4
B
566 585Right-handed alpha
Helix 50
AF5
B
591 613Right-handed alpha
Helix 51
AF6
B
624 648Right-handed alpha
Helix 52
AF7
B
654 682Right-handed alpha
Helix 53
AF8
B
685 700Right-handed alpha
Helix 54
AF9
B
704 713Right-handed alpha
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There are 4 sheets in PDB entry 6JPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
320 328anti-parallel
Strand 3
A
238 240anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
320 328anti-parallel
Strand 3
A
203 206anti-parallel
Strand 4
A
351 353anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
320 328anti-parallel
Strand 3
B
238 240anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
320 328anti-parallel
Strand 3
B
203 206anti-parallel
Strand 4
B
351 353anti-parallel
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