Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JPH entry

There is 1 chain in PDB entry 6JPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 770
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6JPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 31Right-handed 310
Helix 2
AA2
A
32 39Right-handed alpha
Helix 3
AA3
A
40 42Right-handed 310
Helix 4
AA4
A
43 54Right-handed alpha
Helix 5
AA5
A
56 61Right-handed alpha
Helix 6
AA6
A
73 99Right-handed alpha
Helix 7
AA7
A
100 113Right-handed alpha
Helix 8
AA8
A
135 151Right-handed alpha
Helix 9
AA9
A
152 154Right-handed 310
Helix 10
AB1
A
155 181Right-handed alpha
Helix 11
AB2
A
185 202Right-handed alpha
Helix 12
AB3
A
207 226Right-handed alpha
Helix 13
AB4
A
236 259Right-handed alpha
Helix 14
AB5
A
267 277Right-handed alpha
Helix 15
AB6
A
296 301Right-handed alpha
Helix 16
AB7
A
315 326Right-handed alpha
Helix 17
AB8
A
329 333Right-handed 310
Helix 18
AB9
A
346 355Right-handed alpha
Helix 19
AC1
A
435 441Right-handed alpha
Helix 20
AC2
A
444 448Right-handed 310
Helix 21
AC3
A
511 514Right-handed 310
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There are 5 sheets in PDB entry 6JPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
392 397anti-parallel
Strand 4
A
412 417anti-parallel
Strand 5
A
420 421anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
528 535anti-parallel
Strand 3
A
590 601anti-parallel
Strand 4
A
574 582anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 473first strand
Strand 2
A
480 486anti-parallel
Strand 3
A
502 509anti-parallel
Strand 4
A
516 524anti-parallel
Strand 5
A
604 614anti-parallel
Strand 6
A
561 568anti-parallel
Strand 7
A
547 552anti-parallel
Strand 8
A
540 542anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 624first strand
Strand 2
A
631 637anti-parallel
Strand 3
A
640 646anti-parallel
Strand 4
A
664 669anti-parallel
Strand 5
A
675 688anti-parallel
Strand 6
A
691 705anti-parallel
Strand 7
A
711 716anti-parallel
Strand 8
A
762 768anti-parallel
Strand 9
A
735 740anti-parallel
Strand 10
A
743 745anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 655first strand
Strand 2
A
658 660anti-parallel
Strand 3
A
675 688anti-parallel
Strand 4
A
691 705anti-parallel
Strand 5
A
723 728anti-parallel
Strand 6
A
753 758anti-parallel
Strand 7
A
747 750anti-parallel
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