Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JPK entry

There are 2 chains in PDB entry 6JPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 410
B
 SER 2PRO 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6JPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
50 63Right-handed alpha
Helix 4
AA4
A
76 88Right-handed alpha
Helix 5
AA5
A
92 97Right-handed alpha
Helix 6
AA6
A
107 123Right-handed alpha
Helix 7
AA7
A
123 128Right-handed alpha
Helix 8
AA8
A
139 148Right-handed alpha
Helix 9
AA9
A
166 177Right-handed alpha
Helix 10
AB1
A
198 212Right-handed alpha
Helix 11
AB2
A
229 234Right-handed alpha
Helix 12
AB3
A
234 242Right-handed alpha
Helix 13
AB4
A
259 262Right-handed 310
Helix 14
AB5
A
273 290Right-handed alpha
Helix 15
AB6
A
296 309Right-handed alpha
Helix 16
AB7
A
309 341Right-handed alpha
Helix 17
AB8
A
348 353Right-handed alpha
Helix 18
AB9
A
363 375Right-handed alpha
Helix 19
AC1
A
387 389Right-handed 310
Helix 20
AC2
A
393 408Right-handed alpha
Helix 21
AC3
B
5 9Right-handed 310
Helix 22
AC4
B
15 27Right-handed alpha
Helix 23
AC5
B
50 63Right-handed alpha
Helix 24
AC6
B
76 88Right-handed alpha
Helix 25
AC7
B
92 97Right-handed alpha
Helix 26
AC8
B
107 123Right-handed alpha
Helix 27
AC9
B
123 128Right-handed alpha
Helix 28
AD1
B
139 148Right-handed alpha
Helix 29
AD2
B
166 177Right-handed alpha
Helix 30
AD3
B
198 212Right-handed alpha
Helix 31
AD4
B
229 234Right-handed alpha
Helix 32
AD5
B
234 242Right-handed alpha
Helix 33
AD6
B
259 262Right-handed 310
Helix 34
AD7
B
273 290Right-handed alpha
Helix 35
AD8
B
296 308Right-handed alpha
Helix 36
AD9
B
309 341Right-handed alpha
Helix 37
AE1
B
348 353Right-handed alpha
Helix 38
AE2
B
363 375Right-handed alpha
Helix 39
AE3
B
387 389Right-handed 310
Helix 40
AE4
B
393 408Right-handed alpha
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There are 8 sheets in PDB entry 6JPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
376 377parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
247 252anti-parallel
Strand 4
A
215 220parallel
Strand 5
A
182 186parallel
Strand 6
A
131 135parallel
Strand 7
A
152 156parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
164 165anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
383 385anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
376 377parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 106first strand
Strand 2
B
264 270anti-parallel
Strand 3
B
247 252anti-parallel
Strand 4
B
215 220parallel
Strand 5
B
182 186parallel
Strand 6
B
131 135parallel
Strand 7
B
152 156parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
164 165anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 359first strand
Strand 2
B
383 385anti-parallel
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