Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JPL entry

There are 4 chains in PDB entry 6JPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 1013
B	ARG 9	SER 259
C	MET 1	LYS 1013
D	ARG 9	SER 259

There are 30 helices in PDB entry 6JPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	80	Right-handed alpha
Helix 2	AA2	A	83	87	Right-handed 310
Helix 3	AA3	A	315	323	Right-handed alpha
Helix 4	AA4	A	368	372	Right-handed 310
Helix 5	AA5	A	380	382	Right-handed 310
Helix 6	AA6	A	671	675	Right-handed 310
Helix 7	AA7	A	845	848	Right-handed 310
Helix 8	AA8	B	10	19	Right-handed alpha
Helix 9	AA9	B	25	34	Right-handed alpha
Helix 10	AB1	B	55	66	Right-handed alpha
Helix 11	AB2	B	70	74	Right-handed 310
Helix 12	AB3	B	103	113	Right-handed alpha
Helix 13	AB4	B	132	154	Right-handed alpha
Helix 14	AB5	B	170	178	Right-handed alpha
Helix 15	AB6	B	236	246	Right-handed alpha
Helix 16	AB7	C	74	80	Right-handed alpha
Helix 17	AB8	C	83	87	Right-handed 310
Helix 18	AB9	C	315	323	Right-handed alpha
Helix 19	AC1	C	368	372	Right-handed 310
Helix 20	AC2	C	380	382	Right-handed 310
Helix 21	AC3	C	671	675	Right-handed 310
Helix 22	AC4	C	845	848	Right-handed 310
Helix 23	AC5	D	10	19	Right-handed alpha
Helix 24	AC6	D	25	34	Right-handed alpha
Helix 25	AC7	D	55	66	Right-handed alpha
Helix 26	AC8	D	70	74	Right-handed 310
Helix 27	AC9	D	102	113	Right-handed alpha
Helix 28	AD1	D	132	154	Right-handed alpha
Helix 29	AD2	D	170	178	Right-handed alpha
Helix 30	AD3	D	236	246	Right-handed alpha

There are 46 sheets in PDB entry 6JPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	1008	1013	anti-parallel
Strand 3	A	999	1006	anti-parallel
Strand 4	A	981	990	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	27	32	anti-parallel
Strand 4	A	37	43	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	60	65	anti-parallel
Strand 3	A	68	73	anti-parallel
Strand 4	A	88	89	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	105	110	anti-parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	124	128	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	146	first strand
Strand 2	A	149	156	anti-parallel
Strand 3	A	161	165	anti-parallel
Strand 4	A	170	175	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	187	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	202	207	anti-parallel
Strand 4	A	213	218	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	230	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	244	252	anti-parallel
Strand 4	A	258	267	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	280	first strand
Strand 2	A	285	290	anti-parallel
Strand 3	A	295	299	anti-parallel
Strand 4	A	647	649	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	314	first strand
Strand 2	A	633	640	anti-parallel
Strand 3	A	623	630	anti-parallel
Strand 4	A	615	620	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	338	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	350	355	anti-parallel
Strand 4	A	361	366	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	384	388	anti-parallel
Strand 3	A	393	399	anti-parallel
Strand 4	A	406	413	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	429	first strand
Strand 2	A	432	438	anti-parallel
Strand 3	A	446	452	anti-parallel
Strand 4	A	458	464	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	478	first strand
Strand 2	A	481	486	anti-parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	504	506	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	524	first strand
Strand 2	A	527	534	anti-parallel
Strand 3	A	538	545	anti-parallel
Strand 4	A	557	565	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	576	first strand
Strand 2	A	582	588	anti-parallel
Strand 3	A	591	596	anti-parallel
Strand 4	A	601	607	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	662	first strand
Strand 2	A	677	684	anti-parallel
Strand 3	A	689	695	anti-parallel
Strand 4	A	701	707	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	724	728	anti-parallel
Strand 3	A	734	740	anti-parallel
Strand 4	A	748	754	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	773	first strand
Strand 2	A	780	786	anti-parallel
Strand 3	A	790	797	anti-parallel
Strand 4	A	802	810	anti-parallel
Strand 5	A	869	870	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	824	first strand
Strand 2	A	827	834	anti-parallel
Strand 3	A	838	843	anti-parallel
Strand 4	A	876	879	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	859	861	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	892	first strand
Strand 2	A	898	905	anti-parallel
Strand 3	A	910	917	anti-parallel
Strand 4	A	923	931	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	939	945	first strand
Strand 2	A	950	955	anti-parallel
Strand 3	A	959	966	anti-parallel
Strand 4	A	969	977	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	78	83	parallel
Strand 3	B	46	50	parallel
Strand 4	B	118	123	parallel
Strand 5	B	155	166	parallel
Strand 6	B	199	207	anti-parallel
Strand 7	B	182	188	anti-parallel
Strand 8	B	253	254	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	1008	1013	anti-parallel
Strand 3	C	999	1006	anti-parallel
Strand 4	C	981	990	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	27	32	anti-parallel
Strand 4	C	37	43	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	60	65	anti-parallel
Strand 3	C	68	73	anti-parallel
Strand 4	C	88	89	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	99	first strand
Strand 2	C	105	110	anti-parallel
Strand 3	C	115	119	anti-parallel
Strand 4	C	124	128	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	146	first strand
Strand 2	C	149	156	anti-parallel
Strand 3	C	161	165	anti-parallel
Strand 4	C	170	175	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	187	first strand
Strand 2	C	193	198	anti-parallel
Strand 3	C	202	207	anti-parallel
Strand 4	C	213	218	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	230	first strand
Strand 2	C	235	240	anti-parallel
Strand 3	C	244	252	anti-parallel
Strand 4	C	258	267	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	280	first strand
Strand 2	C	285	290	anti-parallel
Strand 3	C	295	299	anti-parallel
Strand 4	C	647	649	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	314	first strand
Strand 2	C	633	640	anti-parallel
Strand 3	C	623	630	anti-parallel
Strand 4	C	615	620	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	338	first strand
Strand 2	C	341	346	anti-parallel
Strand 3	C	350	355	anti-parallel
Strand 4	C	361	366	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	379	first strand
Strand 2	C	384	388	anti-parallel
Strand 3	C	393	399	anti-parallel
Strand 4	C	406	413	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	429	first strand
Strand 2	C	432	438	anti-parallel
Strand 3	C	446	452	anti-parallel
Strand 4	C	458	464	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	478	first strand
Strand 2	C	481	486	anti-parallel
Strand 3	C	491	495	anti-parallel
Strand 4	C	504	506	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	524	first strand
Strand 2	C	527	534	anti-parallel
Strand 3	C	538	545	anti-parallel
Strand 4	C	557	565	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	570	576	first strand
Strand 2	C	582	588	anti-parallel
Strand 3	C	591	596	anti-parallel
Strand 4	C	601	607	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	657	662	first strand
Strand 2	C	677	684	anti-parallel
Strand 3	C	689	695	anti-parallel
Strand 4	C	701	707	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	719	first strand
Strand 2	C	724	728	anti-parallel
Strand 3	C	734	740	anti-parallel
Strand 4	C	748	754	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	766	773	first strand
Strand 2	C	780	786	anti-parallel
Strand 3	C	790	797	anti-parallel
Strand 4	C	802	810	anti-parallel
Strand 5	C	869	870	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	816	824	first strand
Strand 2	C	827	834	anti-parallel
Strand 3	C	838	843	anti-parallel
Strand 4	C	876	879	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	850	852	first strand
Strand 2	C	859	861	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	892	first strand
Strand 2	C	898	905	anti-parallel
Strand 3	C	910	917	anti-parallel
Strand 4	C	923	931	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	939	945	first strand
Strand 2	C	950	955	anti-parallel
Strand 3	C	959	966	anti-parallel
Strand 4	C	969	977	anti-parallel

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There are 8 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	97	first strand
Strand 2	D	78	83	parallel
Strand 3	D	46	50	parallel
Strand 4	D	118	123	parallel
Strand 5	D	155	166	parallel
Strand 6	D	199	207	anti-parallel
Strand 7	D	182	188	anti-parallel
Strand 8	D	253	254	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPL