Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JPW entry

There are 14 chains in PDB entry 6JPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 50	VAL 87
B	GLU 17	ARG 170
C	ASP 50	VAL 87
D	GLU 12	ARG 170
E	ASP 50	VAL 87
F	GLU 17	ARG 170
G	ASP 50	VAL 87
H	GLU 17	ARG 170
J	SER 1	SER 1
J	GLY 3	LYS 6
K	SER 1	SER 1
K	GLY 3	LYS 6
L	SER 1	SER 1
L	GLY 3	LYS 6

There are 6 helices in PDB entry 6JPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	50	54	Right-handed alpha
Helix 2	AA2	B	131	135	Right-handed 310
Helix 3	AA3	D	29	32	Right-handed 310
Helix 4	AA4	D	50	54	Right-handed alpha
Helix 5	AA5	F	50	54	Right-handed alpha
Helix 6	AA6	H	50	54	Right-handed alpha

There are 13 sheets in PDB entry 6JPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	57	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	33	42	anti-parallel
Strand 4	B	45	49	anti-parallel
Strand 5	B	76	79	anti-parallel
Strand 6	B	67	71	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	B	107	111	parallel
Strand 3	B	95	99	anti-parallel
Strand 4	B	138	140	anti-parallel
Strand 5	B	146	149	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	B	114	118	parallel
Strand 4	B	121	126	anti-parallel
Strand 5	B	161	164	anti-parallel
Strand 6	B	153	155	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	65	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	65	first strand
Strand 2	D	58	60	anti-parallel
Strand 3	C	51	57	parallel
Strand 4	D	21	27	anti-parallel
Strand 5	D	35	42	anti-parallel
Strand 6	D	45	49	anti-parallel
Strand 7	D	76	79	anti-parallel
Strand 8	D	67	71	anti-parallel
Strand 9	F	67	71	anti-parallel
Strand 10	F	76	79	anti-parallel
Strand 11	F	45	49	anti-parallel
Strand 12	F	33	42	anti-parallel
Strand 13	F	21	28	anti-parallel
Strand 14	E	51	57	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	D	107	111	parallel
Strand 3	D	95	99	anti-parallel
Strand 4	D	138	140	anti-parallel
Strand 5	D	146	149	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	D	114	118	parallel
Strand 4	D	121	126	anti-parallel
Strand 5	D	161	164	anti-parallel
Strand 6	D	152	155	anti-parallel
Strand 7	J	4	5	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	F	107	111	parallel
Strand 3	F	95	99	anti-parallel
Strand 4	F	138	140	anti-parallel
Strand 5	F	146	149	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	73	78	anti-parallel
Strand 3	F	114	118	parallel
Strand 4	F	121	126	anti-parallel
Strand 5	F	161	164	anti-parallel
Strand 6	F	152	155	anti-parallel
Strand 7	K	4	5	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	63	65	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	58	60	anti-parallel
Strand 3	G	51	57	parallel
Strand 4	H	21	28	anti-parallel
Strand 5	H	33	42	anti-parallel
Strand 6	H	45	49	anti-parallel
Strand 7	H	76	79	anti-parallel
Strand 8	H	67	71	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	67	first strand
Strand 2	H	107	111	parallel
Strand 3	H	95	99	anti-parallel
Strand 4	H	138	140	anti-parallel
Strand 5	H	146	149	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	86	first strand
Strand 2	G	73	78	anti-parallel
Strand 3	H	114	118	parallel
Strand 4	H	121	126	anti-parallel
Strand 5	H	161	164	anti-parallel
Strand 6	H	152	155	anti-parallel
Strand 7	L	4	5	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JPW