Analysis of interatomic Contacts of Structural Units in PDB entry:
6JQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JQ0 entry

There are 7 chains in PDB entry 6JQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 261ILE 1186
B
 SER 261ILE 1186
C
 LEU 263ASN 1187
D
 LEU 263ILE 1186
E
 PRO 256ILE 1186
F
 PHE 265ILE 1186
G
 UNK 333UNK 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are165 helices in PDB entry 6JQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
271 281Right-handed alpha
Helix 2
AA2
A
282 288Right-handed alpha
Helix 3
AA3
A
312 322Right-handed alpha
Helix 4
AA4
A
347 362Right-handed alpha
Helix 5
AA5
A
372 377Right-handed alpha
Helix 6
AA6
A
385 400Right-handed alpha
Helix 7
AA7
A
421 425Right-handed 310
Helix 8
AA8
A
440 450Right-handed alpha
Helix 9
AA9
A
451 453Right-handed 310
Helix 10
AB1
A
460 465Right-handed alpha
Helix 11
AB2
A
465 470Right-handed alpha
Helix 12
AB3
A
475 490Right-handed alpha
Helix 13
AB4
A
515 524Right-handed alpha
Helix 14
AB5
A
549 558Right-handed alpha
Helix 15
AB6
A
559 564Right-handed alpha
Helix 16
AB7
A
571 576Right-handed alpha
Helix 17
AB8
A
617 622Right-handed alpha
Helix 18
AB9
A
623 626Right-handed 310
Helix 19
AC1
A
635 639Right-handed 310
Helix 20
AC2
A
648 661Right-handed alpha
Helix 21
AC3
A
673 678Right-handed alpha
Helix 22
AC4
A
679 692Right-handed alpha
Helix 23
AC5
A
713 718Right-handed alpha
Helix 24
AC6
A
741 746Right-handed alpha
Helix 25
AC7
A
1147 1152Right-handed 310
Helix 26
AC8
A
1175 1183Right-handed alpha
Helix 27
AC9
B
272 279Right-handed alpha
Helix 28
AD1
B
283 288Right-handed alpha
Helix 29
AD2
B
288 293Right-handed alpha
Helix 30
AD3
B
314 324Right-handed alpha
Helix 31
AD4
B
347 363Right-handed alpha
Helix 32
AD5
B
372 376Right-handed 310
Helix 33
AD6
B
385 399Right-handed alpha
Helix 34
AD7
B
421 425Right-handed 310
Helix 35
AD8
B
441 450Right-handed alpha
Helix 36
AD9
B
460 470Right-handed alpha
Helix 37
AE1
B
477 487Right-handed alpha
Helix 38
AE2
B
489 495Right-handed alpha
Helix 39
AE3
B
496 499Right-handed 310
Helix 40
AE4
B
515 524Right-handed alpha
Helix 41
AE5
B
542 544Right-handed 310
Helix 42
AE6
B
545 550Right-handed alpha
Helix 43
AE7
B
550 562Right-handed alpha
Helix 44
AE8
B
571 576Right-handed alpha
Helix 45
AE9
B
635 639Right-handed 310
Helix 46
AF1
B
646 660Right-handed alpha
Helix 47
AF2
B
670 675Right-handed alpha
Helix 48
AF3
B
679 688Right-handed alpha
Helix 49
AF4
B
708 712Right-handed 310
Helix 50
AF5
B
715 720Right-handed alpha
Helix 51
AF6
B
736 741Right-handed alpha
Helix 52
AF7
B
741 748Right-handed alpha
Helix 53
AF8
B
1130 1141Right-handed alpha
Helix 54
AF9
B
1146 1151Right-handed alpha
Helix 55
AG1
B
1152 1157Right-handed alpha
Helix 56
AG2
B
1157 1162Right-handed alpha
Helix 57
AG3
B
1170 1175Right-handed alpha
Helix 58
AG4
B
1176 1183Right-handed alpha
Helix 59
AG5
C
272 283Right-handed alpha
Helix 60
AG6
C
289 294Right-handed alpha
Helix 61
AG7
C
312 326Right-handed alpha
Helix 62
AG8
C
348 362Right-handed alpha
Helix 63
AG9
C
373 376Right-handed 310
Helix 64
AH1
C
385 400Right-handed alpha
Helix 65
AH2
C
421 425Right-handed 310
Helix 66
AH3
C
442 451Right-handed alpha
Helix 67
AH4
C
460 470Right-handed alpha
Helix 68
AH5
C
477 495Right-handed alpha
Helix 69
AH6
C
496 499Right-handed 310
Helix 70
AH7
C
508 512Right-handed 310
Helix 71
AH8
C
515 524Right-handed alpha
Helix 72
AH9
C
545 549Right-handed 310
Helix 73
AI1
C
553 562Right-handed alpha
Helix 74
AI2
C
571 576Right-handed alpha
Helix 75
AI3
C
589 595Right-handed 310
Helix 76
AI4
C
614 617Right-handed 310
Helix 77
AI5
C
618 623Right-handed alpha
Helix 78
AI6
C
646 659Right-handed alpha
Helix 79
AI7
C
670 674Right-handed 310
Helix 80
AI8
C
679 693Right-handed alpha
Helix 81
AI9
C
715 720Right-handed alpha
Helix 82
AJ1
C
722 724Right-handed 310
Helix 83
AJ2
C
733 741Right-handed alpha
Helix 84
AJ3
C
741 749Right-handed alpha
Helix 85
AJ4
C
1131 1141Right-handed alpha
Helix 86
AJ5
C
1146 1165Right-handed alpha
Helix 87
AJ6
C
1169 1173Right-handed 310
Helix 88
AJ7
C
1174 1179Right-handed alpha
Helix 89
AJ8
D
272 279Right-handed alpha
Helix 90
AJ9
D
289 293Right-handed 310
Helix 91
AK1
D
313 323Right-handed alpha
Helix 92
AK2
D
324 328Right-handed 310
Helix 93
AK3
D
347 362Right-handed alpha
Helix 94
AK4
D
372 376Right-handed 310
Helix 95
AK5
D
386 398Right-handed alpha
Helix 96
AK6
D
421 425Right-handed 310
Helix 97
AK7
D
442 451Right-handed alpha
Helix 98
AK8
D
460 471Right-handed alpha
Helix 99
AK9
D
478 495Right-handed alpha
Helix 100
AL1
D
496 501Right-handed 310
Helix 101
AL2
D
515 525Right-handed alpha
Helix 102
AL3
D
542 544Right-handed 310
Helix 103
AL4
D
545 564Right-handed alpha
Helix 104
AL5
D
571 575Right-handed 310
Helix 105
AL6
D
591 596Right-handed alpha
Helix 106
AL7
D
614 617Right-handed 310
Helix 107
AL8
D
618 623Right-handed alpha
Helix 108
AL9
D
646 659Right-handed alpha
Helix 109
AM1
D
670 675Right-handed alpha
Helix 110
AM2
D
679 693Right-handed alpha
Helix 111
AM3
D
736 741Right-handed alpha
Helix 112
AM4
D
741 749Right-handed alpha
Helix 113
AM5
D
1132 1138Right-handed alpha
Helix 114
AM6
D
1146 1155Right-handed alpha
Helix 115
AM7
D
1156 1164Right-handed alpha
Helix 116
AM8
D
1172 1180Right-handed alpha
Helix 117
AM9
E
272 283Right-handed alpha
Helix 118
AN1
E
288 292Right-handed 310
Helix 119
AN2
E
316 326Right-handed alpha
Helix 120
AN3
E
350 362Right-handed alpha
Helix 121
AN4
E
372 376Right-handed 310
Helix 122
AN5
E
387 400Right-handed alpha
Helix 123
AN6
E
442 451Right-handed alpha
Helix 124
AN7
E
460 464Right-handed 310
Helix 125
AN8
E
466 471Right-handed alpha
Helix 126
AN9
E
477 495Right-handed alpha
Helix 127
AO1
E
496 499Right-handed 310
Helix 128
AO2
E
516 526Right-handed alpha
Helix 129
AO3
E
545 564Right-handed alpha
Helix 130
AO4
E
571 576Right-handed alpha
Helix 131
AO5
E
589 595Right-handed alpha
Helix 132
AO6
E
618 622Right-handed 310
Helix 133
AO7
E
635 640Right-handed alpha
Helix 134
AO8
E
646 659Right-handed alpha
Helix 135
AO9
E
679 688Right-handed alpha
Helix 136
AP1
E
715 720Right-handed alpha
Helix 137
AP2
E
722 726Right-handed 310
Helix 138
AP3
E
733 741Right-handed alpha
Helix 139
AP4
E
741 748Right-handed alpha
Helix 140
AP5
E
1130 1139Right-handed alpha
Helix 141
AP6
E
1146 1157Right-handed alpha
Helix 142
AP7
E
1157 1164Right-handed alpha
Helix 143
AP8
E
1176 1185Right-handed alpha
Helix 144
AP9
F
273 278Right-handed alpha
Helix 145
AQ1
F
312 325Right-handed alpha
Helix 146
AQ2
F
348 362Right-handed alpha
Helix 147
AQ3
F
386 394Right-handed alpha
Helix 148
AQ4
F
394 399Right-handed alpha
Helix 149
AQ5
F
421 426Right-handed 310
Helix 150
AQ6
F
442 448Right-handed alpha
Helix 151
AQ7
F
461 471Right-handed alpha
Helix 152
AQ8
F
477 495Right-handed alpha
Helix 153
AQ9
F
516 523Right-handed alpha
Helix 154
AR1
F
545 549Right-handed 310
Helix 155
AR2
F
553 564Right-handed alpha
Helix 156
AR3
F
614 617Right-handed 310
Helix 157
AR4
F
618 624Right-handed alpha
Helix 158
AR5
F
646 659Right-handed alpha
Helix 159
AR6
F
670 678Right-handed alpha
Helix 160
AR7
F
679 688Right-handed alpha
Helix 161
AR8
F
722 726Right-handed 310
Helix 162
AR9
F
741 747Right-handed alpha
Helix 163
AS1
F
1131 1141Right-handed alpha
Helix 164
AS2
F
1146 1163Right-handed alpha
Helix 165
AS3
F
1173 1186Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 6JQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
367 369parallel
Strand 3
A
409 414parallel
Strand 4
A
302 306parallel
Strand 5
A
433 435parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 633first strand
Strand 2
A
664 669parallel
Strand 3
A
699 704parallel
Strand 4
A
604 608parallel
Strand 5
A
726 728parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 335first strand
Strand 2
B
366 370parallel
Strand 3
B
408 414parallel
Strand 4
B
302 306parallel
Strand 5
B
433 435parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
604 607first strand
Strand 2
B
699 704parallel
Strand 3
B
664 665parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
332 336first strand
Strand 2
C
366 371parallel
Strand 3
C
408 414parallel
Strand 4
C
302 306parallel
Strand 5
C
433 435parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
630 633first strand
Strand 2
C
664 668parallel
Strand 3
C
702 704parallel
Strand 4
C
605 608parallel
Strand 5
C
726 728parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
305 306first strand
Strand 2
D
413 414parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
332 334first strand
Strand 2
D
366 369parallel
Strand 3
D
408 411parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
630 631first strand
Strand 2
D
664 669parallel
Strand 3
D
699 704parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
332 334first strand
Strand 2
E
366 370parallel
Strand 3
E
408 414parallel
Strand 4
E
303 306parallel
Strand 5
E
433 435parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
607 608first strand
Strand 2
E
727 728parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
630 633first strand
Strand 2
E
664 667parallel
Strand 3
E
699 700parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
332 334first strand
Strand 2
F
366 370parallel
Strand 3
F
408 414parallel
Strand 4
F
302 306parallel
Strand 5
F
430 433parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
605 606first strand
Strand 2
F
699 703parallel
Strand 3
F
664 668parallel
Strand 4
F
630 633parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il