Analysis of interatomic Contacts of Structural Units in PDB entry:
6JQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JQF entry

There is 1 chain in PDB entry 6JQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23LEU 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6JQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 28Right-handed alpha
Helix 2
AA2
A
139 155Right-handed alpha
Helix 3
AA3
A
199 217Right-handed alpha
Helix 4
AA4
A
247 261Right-handed alpha
Helix 5
AA5
A
276 283Right-handed alpha
Helix 6
AA6
A
286 291Right-handed alpha
Helix 7
AA7
A
317 331Right-handed alpha
Helix 8
AA8
A
345 350Right-handed alpha
Helix 9
AA9
A
352 356Right-handed 310
Helix 10
AB1
A
363 370Right-handed 310
Helix 11
AB2
A
375 391Right-handed alpha
Helix 12
AB3
A
417 435Right-handed alpha
Helix 13
AB4
A
470 477Right-handed alpha
Helix 14
AB5
A
485 489Right-handed alpha
Helix 15
AB6
A
499 502Right-handed 310
Helix 16
AB7
A
503 511Right-handed alpha
Helix 17
AB8
A
540 544Right-handed 310
Helix 18
AB9
A
548 569Right-handed alpha
Helix 19
AC1
A
576 588Right-handed alpha
Helix 20
AC2
A
711 715Right-handed 310
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There are 9 sheets in PDB entry 6JQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
75 85anti-parallel
Strand 3
A
88 91anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
75 85anti-parallel
Strand 3
A
95 99anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 128first strand
Strand 2
A
220 228anti-parallel
Strand 3
A
184 189anti-parallel
Strand 4
A
192 197anti-parallel
Strand 5
A
169 173parallel
Strand 6
A
132 136parallel
Strand 7
A
157 161parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 491first strand
Strand 2
A
528 535parallel
Strand 3
A
480 483parallel
Strand 4
A
460 463parallel
Strand 5
A
438 442parallel
Strand 6
A
406 410parallel
Strand 7
A
334 341parallel
Strand 8
A
265 269parallel
Strand 9
A
234 239parallel
Strand 10
A
528 535parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
293 295anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
398 399anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 516first strand
Strand 2
A
519 520anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 607first strand
Strand 2
A
746 755anti-parallel
Strand 3
A
625 633anti-parallel
Strand 4
A
682 690anti-parallel
Strand 5
A
693 698anti-parallel
Strand 6
A
701 705anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 615first strand
Strand 2
A
739 740anti-parallel
Strand 3
A
642 647anti-parallel
Strand 4
A
650 655anti-parallel
Strand 5
A
662 665anti-parallel
Strand 6
A
670 672anti-parallel
Strand 7
A
707 708anti-parallel
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