Analysis of interatomic Contacts of Structural Units in PDB entry:
6JQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JQH entry

There are 2 chains in PDB entry 6JQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 30LEU 546
B
 THR 30LEU 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6JQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 42Right-handed alpha
Helix 2
AA2
A
49 52Right-handed 310
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
91 105Right-handed alpha
Helix 6
AA6
A
156 166Right-handed alpha
Helix 7
AA7
A
182 188Right-handed alpha
Helix 8
AA8
A
195 200Right-handed alpha
Helix 9
AA9
A
201 204Right-handed 310
Helix 10
AB1
A
220 225Right-handed alpha
Helix 11
AB2
A
225 232Right-handed alpha
Helix 12
AB3
A
236 240Right-handed 310
Helix 13
AB4
A
268 282Right-handed alpha
Helix 14
AB5
A
322 334Right-handed alpha
Helix 15
AB6
A
335 338Right-handed 310
Helix 16
AB7
A
340 342Right-handed 310
Helix 17
AB8
A
348 357Right-handed alpha
Helix 18
AB9
A
365 371Right-handed 310
Helix 19
AC1
A
392 402Right-handed alpha
Helix 20
AC2
A
403 406Right-handed 310
Helix 21
AC3
A
419 425Right-handed 310
Helix 22
AC4
A
453 472Right-handed alpha
Helix 23
AC5
A
473 475Right-handed 310
Helix 24
AC6
A
488 492Right-handed 310
Helix 25
AC7
A
501 514Right-handed alpha
Helix 26
AC8
A
516 529Right-handed alpha
Helix 27
AC9
B
31 42Right-handed alpha
Helix 28
AD1
B
49 52Right-handed 310
Helix 29
AD2
B
61 69Right-handed alpha
Helix 30
AD3
B
72 76Right-handed 310
Helix 31
AD4
B
91 105Right-handed alpha
Helix 32
AD5
B
156 168Right-handed alpha
Helix 33
AD6
B
182 190Right-handed alpha
Helix 34
AD7
B
195 200Right-handed alpha
Helix 35
AD8
B
201 204Right-handed 310
Helix 36
AD9
B
220 233Right-handed alpha
Helix 37
AE1
B
236 240Right-handed 310
Helix 38
AE2
B
268 282Right-handed alpha
Helix 39
AE3
B
322 334Right-handed alpha
Helix 40
AE4
B
335 338Right-handed 310
Helix 41
AE5
B
340 342Right-handed 310
Helix 42
AE6
B
348 357Right-handed alpha
Helix 43
AE7
B
365 371Right-handed 310
Helix 44
AE8
B
392 402Right-handed alpha
Helix 45
AE9
B
403 406Right-handed 310
Helix 46
AF1
B
419 425Right-handed 310
Helix 47
AF2
B
453 471Right-handed alpha
Helix 48
AF3
B
472 475Right-handed 310
Helix 49
AF4
B
488 492Right-handed 310
Helix 50
AF5
B
501 514Right-handed alpha
Helix 51
AF6
B
516 529Right-handed alpha
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There are 8 sheets in PDB entry 6JQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
85 87anti-parallel
Strand 3
A
129 133parallel
Strand 4
A
108 112parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
242 249anti-parallel
Strand 4
A
206 212anti-parallel
Strand 5
A
218 219anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
251 252anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
257 265anti-parallel
Strand 3
A
310 319anti-parallel
Strand 4
A
289 298anti-parallel
Strand 5
A
411 417anti-parallel
Strand 6
A
440 448anti-parallel
Strand 7
A
379 387anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
85 87anti-parallel
Strand 3
B
130 133parallel
Strand 4
B
109 112parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
148 152anti-parallel
Strand 3
B
242 249anti-parallel
Strand 4
B
206 212anti-parallel
Strand 5
B
218 219anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
251 252anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 347first strand
Strand 2
B
257 265anti-parallel
Strand 3
B
307 319anti-parallel
Strand 4
B
289 301anti-parallel
Strand 5
B
411 417anti-parallel
Strand 6
B
440 448anti-parallel
Strand 7
B
379 387anti-parallel
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