Analysis of interatomic Contacts of Structural Units in PDB entry:
6JQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JQN entry

There are 6 chains in PDB entry 6JQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	PHE 679
B	GLN 2	PHE 679
C	GLN 2	PHE 679
D	GLN 2	PHE 679
E	GLN 2	PHE 679
F	GLN 2	PHE 679

There are139 helices in PDB entry 6JQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	58	Right-handed alpha
Helix 2	AA2	A	60	77	Right-handed alpha
Helix 3	AA3	A	78	87	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	92	117	Right-handed alpha
Helix 6	AA6	A	161	166	Right-handed alpha
Helix 7	AA7	A	167	174	Right-handed alpha
Helix 8	AA8	A	186	199	Right-handed alpha
Helix 9	AA9	A	236	242	Right-handed alpha
Helix 10	AB1	A	243	249	Right-handed alpha
Helix 11	AB2	A	273	289	Right-handed alpha
Helix 12	AB3	A	290	293	Right-handed 310
Helix 13	AB4	A	307	320	Right-handed alpha
Helix 14	AB5	A	339	355	Right-handed alpha
Helix 15	AB6	A	411	418	Right-handed alpha
Helix 16	AB7	A	431	443	Right-handed alpha
Helix 17	AB8	A	475	479	Right-handed 310
Helix 18	AB9	A	488	492	Right-handed 310
Helix 19	AC1	A	502	511	Right-handed alpha
Helix 20	AC2	A	530	534	Right-handed 310
Helix 21	AC3	A	548	560	Right-handed alpha
Helix 22	AC4	A	563	568	Right-handed alpha
Helix 23	AC5	A	568	574	Right-handed alpha
Helix 24	AC6	A	583	596	Right-handed alpha
Helix 25	AC7	B	40	58	Right-handed alpha
Helix 26	AC8	B	60	78	Right-handed alpha
Helix 27	AC9	B	79	87	Right-handed alpha
Helix 28	AD1	B	88	90	Right-handed 310
Helix 29	AD2	B	92	118	Right-handed alpha
Helix 30	AD3	B	161	174	Right-handed alpha
Helix 31	AD4	B	186	199	Right-handed alpha
Helix 32	AD5	B	218	222	Right-handed 310
Helix 33	AD6	B	233	242	Right-handed alpha
Helix 34	AD7	B	243	249	Right-handed alpha
Helix 35	AD8	B	273	289	Right-handed alpha
Helix 36	AD9	B	290	293	Right-handed 310
Helix 37	AE1	B	304	306	Right-handed 310
Helix 38	AE2	B	307	320	Right-handed alpha
Helix 39	AE3	B	339	354	Right-handed alpha
Helix 40	AE4	B	410	418	Right-handed alpha
Helix 41	AE5	B	431	443	Right-handed alpha
Helix 42	AE6	B	475	479	Right-handed 310
Helix 43	AE7	B	485	489	Right-handed 310
Helix 44	AE8	B	502	511	Right-handed alpha
Helix 45	AE9	B	548	560	Right-handed alpha
Helix 46	AF1	B	563	568	Right-handed alpha
Helix 47	AF2	B	569	574	Right-handed alpha
Helix 48	AF3	B	583	596	Right-handed alpha
Helix 49	AF4	C	40	58	Right-handed alpha
Helix 50	AF5	C	60	78	Right-handed alpha
Helix 51	AF6	C	78	87	Right-handed alpha
Helix 52	AF7	C	88	90	Right-handed 310
Helix 53	AF8	C	92	118	Right-handed alpha
Helix 54	AF9	C	161	174	Right-handed alpha
Helix 55	AG1	C	186	199	Right-handed alpha
Helix 56	AG2	C	233	242	Right-handed alpha
Helix 57	AG3	C	273	289	Right-handed alpha
Helix 58	AG4	C	290	293	Right-handed 310
Helix 59	AG5	C	307	320	Right-handed alpha
Helix 60	AG6	C	339	355	Right-handed alpha
Helix 61	AG7	C	410	418	Right-handed alpha
Helix 62	AG8	C	431	443	Right-handed alpha
Helix 63	AG9	C	475	479	Right-handed 310
Helix 64	AH1	C	485	489	Right-handed 310
Helix 65	AH2	C	502	511	Right-handed alpha
Helix 66	AH3	C	548	560	Right-handed alpha
Helix 67	AH4	C	563	568	Right-handed alpha
Helix 68	AH5	C	569	574	Right-handed alpha
Helix 69	AH6	C	583	596	Right-handed alpha
Helix 70	AH7	D	40	58	Right-handed alpha
Helix 71	AH8	D	60	78	Right-handed alpha
Helix 72	AH9	D	79	87	Right-handed alpha
Helix 73	AI1	D	88	90	Right-handed 310
Helix 74	AI2	D	92	117	Right-handed alpha
Helix 75	AI3	D	161	174	Right-handed alpha
Helix 76	AI4	D	186	199	Right-handed alpha
Helix 77	AI5	D	233	242	Right-handed alpha
Helix 78	AI6	D	243	249	Right-handed alpha
Helix 79	AI7	D	273	289	Right-handed alpha
Helix 80	AI8	D	290	293	Right-handed 310
Helix 81	AI9	D	307	320	Right-handed alpha
Helix 82	AJ1	D	339	355	Right-handed alpha
Helix 83	AJ2	D	390	394	Right-handed 310
Helix 84	AJ3	D	411	418	Right-handed alpha
Helix 85	AJ4	D	431	443	Right-handed alpha
Helix 86	AJ5	D	475	479	Right-handed 310
Helix 87	AJ6	D	485	489	Right-handed 310
Helix 88	AJ7	D	502	511	Right-handed alpha
Helix 89	AJ8	D	548	560	Right-handed alpha
Helix 90	AJ9	D	563	568	Right-handed alpha
Helix 91	AK1	D	568	574	Right-handed alpha
Helix 92	AK2	D	583	596	Right-handed alpha
Helix 93	AK3	E	40	58	Right-handed alpha
Helix 94	AK4	E	60	78	Right-handed alpha
Helix 95	AK5	E	79	87	Right-handed alpha
Helix 96	AK6	E	88	90	Right-handed 310
Helix 97	AK7	E	92	118	Right-handed alpha
Helix 98	AK8	E	161	174	Right-handed alpha
Helix 99	AK9	E	186	199	Right-handed alpha
Helix 100	AL1	E	218	222	Right-handed 310
Helix 101	AL2	E	233	241	Right-handed alpha
Helix 102	AL3	E	243	250	Right-handed alpha
Helix 103	AL4	E	273	289	Right-handed alpha
Helix 104	AL5	E	290	293	Right-handed 310
Helix 105	AL6	E	304	306	Right-handed 310
Helix 106	AL7	E	307	320	Right-handed alpha
Helix 107	AL8	E	339	354	Right-handed alpha
Helix 108	AL9	E	410	418	Right-handed alpha
Helix 109	AM1	E	431	443	Right-handed alpha
Helix 110	AM2	E	475	479	Right-handed 310
Helix 111	AM3	E	485	489	Right-handed 310
Helix 112	AM4	E	502	511	Right-handed alpha
Helix 113	AM5	E	548	560	Right-handed alpha
Helix 114	AM6	E	563	568	Right-handed alpha
Helix 115	AM7	E	569	574	Right-handed alpha
Helix 116	AM8	E	583	596	Right-handed alpha
Helix 117	AM9	F	40	58	Right-handed alpha
Helix 118	AN1	F	60	78	Right-handed alpha
Helix 119	AN2	F	79	87	Right-handed alpha
Helix 120	AN3	F	88	90	Right-handed 310
Helix 121	AN4	F	92	117	Right-handed alpha
Helix 122	AN5	F	161	174	Right-handed alpha
Helix 123	AN6	F	186	199	Right-handed alpha
Helix 124	AN7	F	236	242	Right-handed alpha
Helix 125	AN8	F	243	249	Right-handed alpha
Helix 126	AN9	F	273	289	Right-handed alpha
Helix 127	AO1	F	290	293	Right-handed 310
Helix 128	AO2	F	307	320	Right-handed alpha
Helix 129	AO3	F	339	354	Right-handed alpha
Helix 130	AO4	F	411	418	Right-handed alpha
Helix 131	AO5	F	431	443	Right-handed alpha
Helix 132	AO6	F	475	479	Right-handed 310
Helix 133	AO7	F	485	489	Right-handed 310
Helix 134	AO8	F	502	511	Right-handed alpha
Helix 135	AO9	F	525	529	Right-handed 310
Helix 136	AP1	F	548	560	Right-handed alpha
Helix 137	AP2	F	563	568	Right-handed alpha
Helix 138	AP3	F	568	574	Right-handed alpha
Helix 139	AP4	F	583	596	Right-handed alpha

There are 41 sheets in PDB entry 6JQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	30	34	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	139	146	anti-parallel
Strand 3	A	494	501	anti-parallel
Strand 4	B	448	452	parallel
Strand 5	B	425	428	parallel
Strand 6	B	261	265	parallel
Strand 7	B	298	302	parallel
Strand 8	B	400	404	parallel
Strand 9	B	378	379	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	178	181	parallel
Strand 3	A	151	154	parallel
Strand 4	A	227	230	parallel
Strand 5	A	253	254	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	400	406	parallel
Strand 3	A	298	304	parallel
Strand 4	A	261	265	parallel
Strand 5	A	425	428	parallel
Strand 6	A	448	451	parallel
Strand 7	B	494	501	parallel
Strand 8	B	139	146	anti-parallel
Strand 9	B	124	125	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	400	406	parallel
Strand 3	A	298	304	parallel
Strand 4	A	261	265	parallel
Strand 5	A	425	428	parallel
Strand 6	A	448	451	parallel
Strand 7	B	494	501	parallel
Strand 8	B	139	146	anti-parallel
Strand 9	B	130	131	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	472	first strand
Strand 2	A	483	485	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	541	first strand
Strand 2	A	622	632	anti-parallel
Strand 3	A	545	547	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	541	first strand
Strand 2	A	622	632	anti-parallel
Strand 3	A	646	656	anti-parallel
Strand 4	A	665	673	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	30	34	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	178	181	parallel
Strand 3	B	151	154	parallel
Strand 4	B	227	231	parallel
Strand 5	B	253	256	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	547	first strand
Strand 2	B	622	632	anti-parallel
Strand 3	B	646	656	anti-parallel
Strand 4	B	665	673	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	30	34	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	139	146	anti-parallel
Strand 3	C	130	131	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	139	146	anti-parallel
Strand 3	C	494	501	anti-parallel
Strand 4	D	448	451	parallel
Strand 5	D	425	428	parallel
Strand 6	D	261	265	parallel
Strand 7	D	298	304	parallel
Strand 8	D	400	406	parallel
Strand 9	D	378	379	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	178	181	parallel
Strand 3	C	151	154	parallel
Strand 4	C	227	230	parallel
Strand 5	C	253	254	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	406	first strand
Strand 2	C	298	304	parallel
Strand 3	C	261	265	parallel
Strand 4	C	425	428	parallel
Strand 5	C	449	452	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	541	first strand
Strand 2	C	622	632	anti-parallel
Strand 3	C	545	547	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	541	first strand
Strand 2	C	622	632	anti-parallel
Strand 3	C	646	656	anti-parallel
Strand 4	C	665	673	anti-parallel
Strand 5	C	603	605	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	30	34	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	139	146	anti-parallel
Strand 3	D	494	501	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	178	181	parallel
Strand 3	D	151	154	parallel
Strand 4	D	227	230	parallel
Strand 5	D	253	254	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	541	first strand
Strand 2	D	622	632	anti-parallel
Strand 3	D	545	547	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	541	first strand
Strand 2	D	622	632	anti-parallel
Strand 3	D	646	656	anti-parallel
Strand 4	D	665	673	anti-parallel
Strand 5	D	603	605	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	11	13	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	30	34	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	139	146	anti-parallel
Strand 3	E	130	131	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	139	146	anti-parallel
Strand 3	E	494	501	anti-parallel
Strand 4	F	448	451	parallel
Strand 5	F	425	428	parallel
Strand 6	F	261	265	parallel
Strand 7	F	298	304	parallel
Strand 8	F	400	406	parallel
Strand 9	F	378	379	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	210	first strand
Strand 2	E	178	181	parallel
Strand 3	E	151	154	parallel
Strand 4	E	227	230	parallel
Strand 5	E	253	254	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	402	404	first strand
Strand 2	E	298	302	parallel
Strand 3	E	261	265	parallel
Strand 4	E	425	428	parallel
Strand 5	E	449	452	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	545	547	first strand
Strand 2	E	622	632	anti-parallel
Strand 3	E	646	656	anti-parallel
Strand 4	E	665	673	anti-parallel
Strand 5	E	603	605	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	545	547	first strand
Strand 2	E	622	632	anti-parallel
Strand 3	E	646	656	anti-parallel
Strand 4	E	665	673	anti-parallel
Strand 5	E	609	613	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	11	13	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	23	first strand
Strand 2	F	30	34	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	131	first strand
Strand 2	F	139	146	anti-parallel
Strand 3	F	494	501	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	210	first strand
Strand 2	F	178	181	parallel
Strand 3	F	151	154	parallel
Strand 4	F	227	230	parallel
Strand 5	F	253	254	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	539	541	first strand
Strand 2	F	622	632	anti-parallel
Strand 3	F	545	547	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	539	541	first strand
Strand 2	F	622	632	anti-parallel
Strand 3	F	646	657	anti-parallel
Strand 4	F	665	673	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JQN