Analysis of interatomic Contacts of Structural Units in PDB entry:
6JR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JR8 entry

There are 4 chains in PDB entry 6JR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 25	ASN 836
B	GLU 25	ASN 836
C	GLU 25	ASN 836
D	GLU 25	ASN 836

There are 76 helices in PDB entry 6JR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	243	256	Right-handed alpha
Helix 2	AA2	A	262	267	Right-handed 310
Helix 3	AA3	A	277	291	Right-handed alpha
Helix 4	AA4	A	301	305	Right-handed 310
Helix 5	AA5	A	320	331	Right-handed alpha
Helix 6	AA6	A	347	358	Right-handed alpha
Helix 7	AA7	A	389	404	Right-handed alpha
Helix 8	AA8	A	423	427	Right-handed 310
Helix 9	AA9	A	436	459	Right-handed alpha
Helix 10	AB1	A	474	478	Right-handed 310
Helix 11	AB2	A	491	494	Right-handed 310
Helix 12	AB3	A	495	512	Right-handed alpha
Helix 13	AB4	A	530	546	Right-handed alpha
Helix 14	AB5	A	567	584	Right-handed alpha
Helix 15	AB6	A	584	599	Right-handed alpha
Helix 16	AB7	A	605	610	Right-handed alpha
Helix 17	AB8	A	613	619	Right-handed 310
Helix 18	AB9	A	728	733	Right-handed 310
Helix 19	AC1	A	793	799	Right-handed alpha
Helix 20	AC2	B	243	256	Right-handed alpha
Helix 21	AC3	B	262	267	Right-handed 310
Helix 22	AC4	B	277	291	Right-handed alpha
Helix 23	AC5	B	301	305	Right-handed 310
Helix 24	AC6	B	320	331	Right-handed alpha
Helix 25	AC7	B	347	358	Right-handed alpha
Helix 26	AC8	B	389	404	Right-handed alpha
Helix 27	AC9	B	423	427	Right-handed 310
Helix 28	AD1	B	436	459	Right-handed alpha
Helix 29	AD2	B	474	478	Right-handed 310
Helix 30	AD3	B	491	494	Right-handed 310
Helix 31	AD4	B	495	512	Right-handed alpha
Helix 32	AD5	B	530	546	Right-handed alpha
Helix 33	AD6	B	567	584	Right-handed alpha
Helix 34	AD7	B	584	599	Right-handed alpha
Helix 35	AD8	B	605	610	Right-handed alpha
Helix 36	AD9	B	613	619	Right-handed 310
Helix 37	AE1	B	728	733	Right-handed 310
Helix 38	AE2	B	793	799	Right-handed alpha
Helix 39	AE3	C	243	256	Right-handed alpha
Helix 40	AE4	C	262	267	Right-handed 310
Helix 41	AE5	C	277	291	Right-handed alpha
Helix 42	AE6	C	301	305	Right-handed 310
Helix 43	AE7	C	320	331	Right-handed alpha
Helix 44	AE8	C	347	358	Right-handed alpha
Helix 45	AE9	C	389	404	Right-handed alpha
Helix 46	AF1	C	423	427	Right-handed 310
Helix 47	AF2	C	436	459	Right-handed alpha
Helix 48	AF3	C	474	478	Right-handed 310
Helix 49	AF4	C	491	494	Right-handed 310
Helix 50	AF5	C	495	512	Right-handed alpha
Helix 51	AF6	C	530	546	Right-handed alpha
Helix 52	AF7	C	567	584	Right-handed alpha
Helix 53	AF8	C	584	599	Right-handed alpha
Helix 54	AF9	C	605	610	Right-handed alpha
Helix 55	AG1	C	613	619	Right-handed 310
Helix 56	AG2	C	728	733	Right-handed 310
Helix 57	AG3	C	793	799	Right-handed alpha
Helix 58	AG4	D	243	256	Right-handed alpha
Helix 59	AG5	D	262	267	Right-handed 310
Helix 60	AG6	D	277	291	Right-handed alpha
Helix 61	AG7	D	301	305	Right-handed 310
Helix 62	AG8	D	320	331	Right-handed alpha
Helix 63	AG9	D	347	358	Right-handed alpha
Helix 64	AH1	D	389	404	Right-handed alpha
Helix 65	AH2	D	423	427	Right-handed 310
Helix 66	AH3	D	436	459	Right-handed alpha
Helix 67	AH4	D	474	478	Right-handed 310
Helix 68	AH5	D	491	494	Right-handed 310
Helix 69	AH6	D	495	512	Right-handed alpha
Helix 70	AH7	D	530	546	Right-handed alpha
Helix 71	AH8	D	567	584	Right-handed alpha
Helix 72	AH9	D	584	599	Right-handed alpha
Helix 73	AI1	D	605	610	Right-handed alpha
Helix 74	AI2	D	613	619	Right-handed 310
Helix 75	AI3	D	728	733	Right-handed 310
Helix 76	AI4	D	793	799	Right-handed alpha

There are 48 sheets in PDB entry 6JR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	137	140	anti-parallel
Strand 3	A	143	149	anti-parallel
Strand 4	A	224	229	anti-parallel
Strand 5	A	214	216	anti-parallel
Strand 6	A	172	174	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	40	44	anti-parallel
Strand 3	A	50	55	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	234	240	anti-parallel
Strand 6	A	203	207	anti-parallel
Strand 7	A	196	199	anti-parallel
Strand 8	A	156	158	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	99	103	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	117	122	anti-parallel
Strand 5	A	127	130	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	471	472	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	480	482	parallel
Strand 3	A	465	468	parallel
Strand 4	A	408	411	parallel
Strand 5	A	334	339	parallel
Strand 6	A	297	300	parallel
Strand 7	A	269	270	parallel
Strand 8	A	552	553	parallel
Strand 9	A	520	521	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	380	382	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	429	431	anti-parallel
Strand 3	A	434	435	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	604	first strand
Strand 2	A	623	625	anti-parallel
Strand 3	A	629	631	anti-parallel
Strand 4	A	678	681	anti-parallel
Strand 5	A	650	653	anti-parallel
Strand 6	A	660	662	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	646	first strand
Strand 2	A	665	670	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	685	688	first strand
Strand 2	A	703	707	anti-parallel
Strand 3	A	768	774	parallel
Strand 4	A	818	824	anti-parallel
Strand 5	A	809	813	anti-parallel
Strand 6	A	790	791	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	722	first strand
Strand 2	A	735	745	anti-parallel
Strand 3	A	757	759	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	722	first strand
Strand 2	A	735	745	anti-parallel
Strand 3	A	748	753	anti-parallel
Strand 4	A	830	835	anti-parallel
Strand 5	A	781	784	anti-parallel
Strand 6	A	787	788	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	137	140	anti-parallel
Strand 3	B	143	149	anti-parallel
Strand 4	B	224	229	anti-parallel
Strand 5	B	214	216	anti-parallel
Strand 6	B	172	174	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	40	44	anti-parallel
Strand 3	B	50	55	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	B	234	240	anti-parallel
Strand 6	B	203	207	anti-parallel
Strand 7	B	196	199	anti-parallel
Strand 8	B	156	158	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	99	103	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	117	122	anti-parallel
Strand 5	B	127	130	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	471	472	parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	480	482	parallel
Strand 3	B	465	468	parallel
Strand 4	B	408	411	parallel
Strand 5	B	334	339	parallel
Strand 6	B	297	300	parallel
Strand 7	B	269	270	parallel
Strand 8	B	552	553	parallel
Strand 9	B	520	521	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	380	382	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	429	431	anti-parallel
Strand 3	B	434	435	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	604	first strand
Strand 2	B	623	625	anti-parallel
Strand 3	B	629	631	anti-parallel
Strand 4	B	678	681	anti-parallel
Strand 5	B	650	653	anti-parallel
Strand 6	B	660	662	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	646	first strand
Strand 2	B	665	670	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	685	688	first strand
Strand 2	B	703	707	anti-parallel
Strand 3	B	768	774	parallel
Strand 4	B	818	824	anti-parallel
Strand 5	B	809	813	anti-parallel
Strand 6	B	790	791	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	722	first strand
Strand 2	B	735	745	anti-parallel
Strand 3	B	757	759	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	722	first strand
Strand 2	B	735	745	anti-parallel
Strand 3	B	748	753	anti-parallel
Strand 4	B	830	835	anti-parallel
Strand 5	B	781	784	anti-parallel
Strand 6	B	787	788	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	143	149	anti-parallel
Strand 4	C	224	229	anti-parallel
Strand 5	C	214	216	anti-parallel
Strand 6	C	172	174	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	40	44	anti-parallel
Strand 3	C	50	55	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	234	240	anti-parallel
Strand 6	C	203	207	anti-parallel
Strand 7	C	196	199	anti-parallel
Strand 8	C	156	158	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	99	103	anti-parallel
Strand 3	C	107	112	anti-parallel
Strand 4	C	117	122	anti-parallel
Strand 5	C	127	130	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	471	472	parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	480	482	parallel
Strand 3	C	465	468	parallel
Strand 4	C	408	411	parallel
Strand 5	C	334	339	parallel
Strand 6	C	297	300	parallel
Strand 7	C	269	270	parallel
Strand 8	C	552	553	parallel
Strand 9	C	520	521	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	344	first strand
Strand 2	C	380	382	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	429	431	anti-parallel
Strand 3	C	434	435	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	604	first strand
Strand 2	C	623	625	anti-parallel
Strand 3	C	629	631	anti-parallel
Strand 4	C	678	681	anti-parallel
Strand 5	C	650	653	anti-parallel
Strand 6	C	660	662	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	646	first strand
Strand 2	C	665	670	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	685	688	first strand
Strand 2	C	703	707	anti-parallel
Strand 3	C	768	774	parallel
Strand 4	C	818	824	anti-parallel
Strand 5	C	809	813	anti-parallel
Strand 6	C	790	791	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	722	first strand
Strand 2	C	735	744	anti-parallel
Strand 3	C	757	759	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	722	first strand
Strand 2	C	735	744	anti-parallel
Strand 3	C	748	753	anti-parallel
Strand 4	C	830	835	anti-parallel
Strand 5	C	781	784	anti-parallel
Strand 6	C	787	788	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	137	140	anti-parallel
Strand 3	D	143	149	anti-parallel
Strand 4	D	224	229	anti-parallel
Strand 5	D	214	216	anti-parallel
Strand 6	D	172	174	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	40	44	anti-parallel
Strand 3	D	50	55	anti-parallel
Strand 4	D	60	66	anti-parallel
Strand 5	D	234	240	anti-parallel
Strand 6	D	203	207	anti-parallel
Strand 7	D	196	199	anti-parallel
Strand 8	D	156	158	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	D	107	112	anti-parallel
Strand 4	D	117	122	anti-parallel
Strand 5	D	127	130	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	471	472	parallel

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There are 9 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	518	first strand
Strand 2	D	480	482	parallel
Strand 3	D	465	468	parallel
Strand 4	D	408	411	parallel
Strand 5	D	334	339	parallel
Strand 6	D	297	300	parallel
Strand 7	D	269	270	parallel
Strand 8	D	552	553	parallel
Strand 9	D	520	521	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	344	first strand
Strand 2	D	380	382	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	429	431	anti-parallel
Strand 3	D	434	435	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	604	first strand
Strand 2	D	623	625	anti-parallel
Strand 3	D	629	631	anti-parallel
Strand 4	D	678	681	anti-parallel
Strand 5	D	650	653	anti-parallel
Strand 6	D	660	662	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	641	646	first strand
Strand 2	D	665	670	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	685	688	first strand
Strand 2	D	703	707	anti-parallel
Strand 3	D	768	774	parallel
Strand 4	D	818	824	anti-parallel
Strand 5	D	809	813	anti-parallel
Strand 6	D	790	791	parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	715	722	first strand
Strand 2	D	735	745	anti-parallel
Strand 3	D	757	759	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	715	722	first strand
Strand 2	D	735	745	anti-parallel
Strand 3	D	748	753	anti-parallel
Strand 4	D	830	835	anti-parallel
Strand 5	D	781	784	anti-parallel
Strand 6	D	787	788	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JR8