Analysis of interatomic Contacts of Structural Units in PDB entry:
6JRI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JRI entry

There are 8 chains in PDB entry 6JRI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 1	SER 129
A	VAL 1	SER 129
C	VAL 1	SER 129
D	VAL 1	SER 129
E	VAL 1	SER 129
F	ASP 0	SER 129
G	VAL 1	SER 129
H	VAL 1	SER 129

There are 30 helices in PDB entry 6JRI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	27	31	Right-handed 310
Helix 2	AA2	B	66	68	Right-handed 310
Helix 3	AA3	B	90	94	Right-handed 310
Helix 4	AA4	B	112	114	Right-handed 310
Helix 5	AA5	A	27	29	Right-handed 310
Helix 6	AA6	A	66	68	Right-handed 310
Helix 7	AA7	A	90	94	Right-handed 310
Helix 8	AA8	A	112	114	Right-handed 310
Helix 9	AA9	C	27	31	Right-handed 310
Helix 10	AB1	C	66	68	Right-handed 310
Helix 11	AB2	C	90	94	Right-handed 310
Helix 12	AB3	C	112	114	Right-handed 310
Helix 13	AB4	D	27	31	Right-handed 310
Helix 14	AB5	D	65	68	Right-handed 310
Helix 15	AB6	D	90	94	Right-handed 310
Helix 16	AB7	E	27	31	Right-handed 310
Helix 17	AB8	E	65	68	Right-handed 310
Helix 18	AB9	E	90	94	Right-handed 310
Helix 19	AC1	E	112	114	Right-handed 310
Helix 20	AC2	F	27	31	Right-handed 310
Helix 21	AC3	F	65	68	Right-handed 310
Helix 22	AC4	F	90	94	Right-handed 310
Helix 23	AC5	F	112	114	Right-handed 310
Helix 24	AC6	G	27	31	Right-handed 310
Helix 25	AC7	G	66	68	Right-handed 310
Helix 26	AC8	G	90	94	Right-handed 310
Helix 27	AC9	H	27	31	Right-handed 310
Helix 28	AD1	H	65	68	Right-handed 310
Helix 29	AD2	H	90	94	Right-handed 310
Helix 30	AD3	H	112	114	Right-handed 310

There are 15 sheets in PDB entry 6JRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	71	76	anti-parallel

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There are 22 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	95	102	anti-parallel
Strand 3	B	32	38	anti-parallel
Strand 4	B	44	52	anti-parallel
Strand 5	B	58	64	anti-parallel
Strand 6	A	58	64	anti-parallel
Strand 7	A	44	51	anti-parallel
Strand 8	A	31	38	anti-parallel
Strand 9	A	95	103	anti-parallel
Strand 10	A	123	128	anti-parallel
Strand 11	A	9	12	parallel
Strand 12	C	9	12	anti-parallel
Strand 13	C	123	128	parallel
Strand 14	C	95	102	anti-parallel
Strand 15	C	32	38	anti-parallel
Strand 16	C	44	52	anti-parallel
Strand 17	C	58	64	anti-parallel
Strand 18	G	58	64	anti-parallel
Strand 19	G	44	52	anti-parallel
Strand 20	G	32	38	anti-parallel
Strand 21	G	95	102	anti-parallel
Strand 22	G	116	119	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	95	103	anti-parallel
Strand 3	A	123	128	anti-parallel
Strand 4	A	9	12	parallel
Strand 5	C	9	12	anti-parallel
Strand 6	C	123	128	parallel
Strand 7	C	95	102	anti-parallel
Strand 8	C	116	119	anti-parallel

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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	95	102	anti-parallel
Strand 3	C	32	38	anti-parallel
Strand 4	C	44	52	anti-parallel
Strand 5	C	58	64	anti-parallel
Strand 6	G	58	64	anti-parallel
Strand 7	G	44	52	anti-parallel
Strand 8	G	32	38	anti-parallel
Strand 9	G	95	102	anti-parallel
Strand 10	G	123	128	anti-parallel
Strand 11	G	9	12	parallel
Strand 12	B	9	12	anti-parallel
Strand 13	B	123	128	parallel
Strand 14	B	95	102	anti-parallel
Strand 15	B	116	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	71	76	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	63	first strand
Strand 2	D	44	52	anti-parallel
Strand 3	D	32	38	anti-parallel
Strand 4	D	95	102	anti-parallel
Strand 5	D	123	128	anti-parallel
Strand 6	D	9	12	parallel
Strand 7	F	9	12	anti-parallel
Strand 8	F	123	128	parallel
Strand 9	F	95	102	anti-parallel
Strand 10	F	32	38	anti-parallel
Strand 11	F	44	51	anti-parallel
Strand 12	F	60	63	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	119	first strand
Strand 2	D	95	102	anti-parallel
Strand 3	D	123	128	anti-parallel
Strand 4	D	9	12	parallel
Strand 5	F	9	12	anti-parallel
Strand 6	F	123	128	parallel
Strand 7	F	95	102	anti-parallel
Strand 8	F	116	119	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	17	23	anti-parallel
Strand 3	E	81	86	anti-parallel
Strand 4	E	71	76	anti-parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	E	44	51	anti-parallel
Strand 3	E	32	38	anti-parallel
Strand 4	E	95	102	anti-parallel
Strand 5	E	123	128	anti-parallel
Strand 6	E	9	12	parallel
Strand 7	H	9	12	anti-parallel
Strand 8	H	123	128	parallel
Strand 9	H	95	102	anti-parallel
Strand 10	H	32	38	anti-parallel
Strand 11	H	44	51	anti-parallel
Strand 12	H	60	63	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	95	102	anti-parallel
Strand 3	E	123	128	anti-parallel
Strand 4	E	9	12	parallel
Strand 5	H	9	12	anti-parallel
Strand 6	H	123	128	parallel
Strand 7	H	95	102	anti-parallel
Strand 8	H	116	119	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	17	23	anti-parallel
Strand 3	F	81	86	anti-parallel
Strand 4	F	71	76	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	81	86	anti-parallel
Strand 4	G	71	76	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JRI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JRI