Analysis of interatomic Contacts of Structural Units in PDB entry:
6JRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JRL entry

There are 2 chains in PDB entry 6JRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 302
A
 PHE 304SER 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6JRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
36 42Right-handed alpha
Helix 4
AA4
A
52 64Right-handed alpha
Helix 5
AA5
A
65 68Right-handed 310
Helix 6
AA6
A
85 99Right-handed alpha
Helix 7
AA7
A
104 107Right-handed 310
Helix 8
AA8
A
108 126Right-handed alpha
Helix 9
AA9
A
129 133Right-handed 310
Helix 10
AB1
A
147 169Right-handed alpha
Helix 11
AB2
A
175 182Right-handed alpha
Helix 12
AB3
A
192 203Right-handed alpha
Helix 13
AB4
A
218 232Right-handed alpha
Helix 14
AB5
A
253 264Right-handed alpha
Helix 15
AB6
A
274 289Right-handed 310
Helix 16
AB7
A
290 294Right-handed 310
Helix 17
AB8
A
301 305Right-handed alpha
Helix 18
AB9
A
319 324Right-handed alpha
Helix 19
AC1
A
345 349Right-handed 310
Helix 20
AC2
A
358 395Right-handed alpha
Helix 21
AC3
A
416 431Right-handed alpha
Helix 22
AC4
A
456 478Right-handed alpha
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There are 2 sheets in PDB entry 6JRL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
296 300anti-parallel
Strand 4
A
267 271parallel
Strand 5
A
235 242parallel
Strand 6
A
183 188parallel
Strand 7
A
206 209parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
436 440anti-parallel
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