Analysis of interatomic Contacts of Structural Units in PDB entry:
6JRQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JRQ entry

There are 4 chains in PDB entry 6JRQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	VAL 408
B	PRO 2	VAL 408
C	PRO 2	VAL 408
D	PRO 2	VAL 408

There are 76 helices in PDB entry 6JRQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	25	Right-handed alpha
Helix 2	AA2	A	56	61	Right-handed 310
Helix 3	AA3	A	75	89	Right-handed alpha
Helix 4	AA4	A	105	113	Right-handed alpha
Helix 5	AA5	A	124	134	Right-handed alpha
Helix 6	AA6	A	139	144	Right-handed 310
Helix 7	AA7	A	145	160	Right-handed alpha
Helix 8	AA8	A	160	167	Right-handed alpha
Helix 9	AA9	A	171	187	Right-handed alpha
Helix 10	AB1	A	192	203	Right-handed alpha
Helix 11	AB2	A	214	218	Right-handed 310
Helix 12	AB3	A	234	242	Right-handed alpha
Helix 13	AB4	A	244	248	Right-handed 310
Helix 14	AB5	A	272	284	Right-handed alpha
Helix 15	AB6	A	301	312	Right-handed alpha
Helix 16	AB7	A	320	324	Right-handed 310
Helix 17	AB8	A	346	348	Right-handed 310
Helix 18	AB9	A	366	370	Right-handed 310
Helix 19	AC1	A	371	386	Right-handed alpha
Helix 20	AC2	B	16	25	Right-handed alpha
Helix 21	AC3	B	56	61	Right-handed 310
Helix 22	AC4	B	75	89	Right-handed alpha
Helix 23	AC5	B	105	113	Right-handed alpha
Helix 24	AC6	B	124	134	Right-handed alpha
Helix 25	AC7	B	139	144	Right-handed 310
Helix 26	AC8	B	145	160	Right-handed alpha
Helix 27	AC9	B	160	167	Right-handed alpha
Helix 28	AD1	B	171	187	Right-handed alpha
Helix 29	AD2	B	192	203	Right-handed alpha
Helix 30	AD3	B	214	218	Right-handed 310
Helix 31	AD4	B	233	241	Right-handed alpha
Helix 32	AD5	B	244	248	Right-handed 310
Helix 33	AD6	B	272	284	Right-handed alpha
Helix 34	AD7	B	301	312	Right-handed alpha
Helix 35	AD8	B	320	325	Right-handed 310
Helix 36	AD9	B	346	348	Right-handed 310
Helix 37	AE1	B	366	370	Right-handed 310
Helix 38	AE2	B	371	386	Right-handed alpha
Helix 39	AE3	C	16	25	Right-handed alpha
Helix 40	AE4	C	56	61	Right-handed 310
Helix 41	AE5	C	75	89	Right-handed alpha
Helix 42	AE6	C	105	113	Right-handed alpha
Helix 43	AE7	C	124	134	Right-handed alpha
Helix 44	AE8	C	139	144	Right-handed 310
Helix 45	AE9	C	145	160	Right-handed alpha
Helix 46	AF1	C	160	167	Right-handed alpha
Helix 47	AF2	C	171	187	Right-handed alpha
Helix 48	AF3	C	192	203	Right-handed alpha
Helix 49	AF4	C	214	218	Right-handed 310
Helix 50	AF5	C	233	242	Right-handed alpha
Helix 51	AF6	C	244	248	Right-handed 310
Helix 52	AF7	C	272	284	Right-handed alpha
Helix 53	AF8	C	301	312	Right-handed alpha
Helix 54	AF9	C	320	325	Right-handed 310
Helix 55	AG1	C	346	348	Right-handed 310
Helix 56	AG2	C	366	370	Right-handed 310
Helix 57	AG3	C	371	386	Right-handed alpha
Helix 58	AG4	D	16	25	Right-handed alpha
Helix 59	AG5	D	56	61	Right-handed 310
Helix 60	AG6	D	75	89	Right-handed alpha
Helix 61	AG7	D	105	113	Right-handed alpha
Helix 62	AG8	D	124	134	Right-handed alpha
Helix 63	AG9	D	139	144	Right-handed 310
Helix 64	AH1	D	145	160	Right-handed alpha
Helix 65	AH2	D	160	167	Right-handed alpha
Helix 66	AH3	D	171	187	Right-handed alpha
Helix 67	AH4	D	192	203	Right-handed alpha
Helix 68	AH5	D	214	218	Right-handed 310
Helix 69	AH6	D	234	241	Right-handed alpha
Helix 70	AH7	D	244	248	Right-handed 310
Helix 71	AH8	D	272	284	Right-handed alpha
Helix 72	AH9	D	301	312	Right-handed alpha
Helix 73	AI1	D	320	324	Right-handed 310
Helix 74	AI2	D	346	348	Right-handed 310
Helix 75	AI3	D	366	370	Right-handed 310
Helix 76	AI4	D	371	386	Right-handed alpha

There are 20 sheets in PDB entry 6JRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	94	98	parallel
Strand 3	A	65	68	parallel
Strand 4	A	29	32	parallel
Strand 5	A	207	210	parallel
Strand 6	A	3	8	parallel
Strand 7	A	250	256	parallel
Strand 8	A	315	319	parallel
Strand 9	A	389	393	parallel
Strand 10	A	401	403	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	48	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	102	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	295	297	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	329	336	parallel
Strand 3	A	350	356	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	94	98	parallel
Strand 3	B	65	68	parallel
Strand 4	B	29	32	parallel
Strand 5	B	207	210	parallel
Strand 6	B	3	8	parallel
Strand 7	B	250	256	parallel
Strand 8	B	315	319	parallel
Strand 9	B	389	393	parallel
Strand 10	B	401	403	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	48	52	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	102	103	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	295	297	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	329	336	parallel
Strand 3	B	350	356	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	94	98	parallel
Strand 3	C	65	68	parallel
Strand 4	C	29	32	parallel
Strand 5	C	207	210	parallel
Strand 6	C	3	8	parallel
Strand 7	C	250	256	parallel
Strand 8	C	315	319	parallel
Strand 9	C	389	393	parallel
Strand 10	C	401	403	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	48	52	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	102	103	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	295	297	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	300	first strand
Strand 2	C	329	336	parallel
Strand 3	C	350	356	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	94	98	parallel
Strand 3	D	65	68	parallel
Strand 4	D	29	32	parallel
Strand 5	D	207	210	parallel
Strand 6	D	3	8	parallel
Strand 7	D	250	256	parallel
Strand 8	D	315	319	parallel
Strand 9	D	389	393	parallel
Strand 10	D	401	403	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	48	52	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	102	103	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	295	297	anti-parallel
Strand 3	D	270	271	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	300	first strand
Strand 2	D	329	336	parallel
Strand 3	D	350	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JRQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JRQ