Analysis of interatomic Contacts of Structural Units in PDB entry:
6JSB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JSB entry

There are 2 chains in PDB entry 6JSB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 34HIS 232
B
 MET 34HIS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6JSB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 58Right-handed alpha
Helix 2
AA2
A
59 64Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
120 126Right-handed 310
Helix 5
AA5
A
199 206Right-handed alpha
Helix 6
AA6
B
50 58Right-handed alpha
Helix 7
AA7
B
59 64Right-handed alpha
Helix 8
AA8
B
84 88Right-handed 310
Helix 9
AA9
B
120 126Right-handed 310
Helix 10
AB1
B
199 206Right-handed alpha
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There are 5 sheets in PDB entry 6JSB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
89 98anti-parallel
Strand 3
A
101 104anti-parallel
Strand 4
A
128 142anti-parallel
Strand 5
A
107 114anti-parallel
Strand 6
A
72 76anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
89 98anti-parallel
Strand 3
A
35 47anti-parallel
Strand 4
A
219 231anti-parallel
Strand 5
A
189 198anti-parallel
Strand 6
A
166 179anti-parallel
Strand 7
A
145 155anti-parallel
Strand 8
A
128 142anti-parallel
Strand 9
A
107 114anti-parallel
Strand 10
A
72 76anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
89 98anti-parallel
Strand 3
A
35 47anti-parallel
Strand 4
B
35 47anti-parallel
Strand 5
B
89 98anti-parallel
Strand 6
B
80 82anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
89 98anti-parallel
Strand 3
A
35 47anti-parallel
Strand 4
B
35 47anti-parallel
Strand 5
B
219 230anti-parallel
Strand 6
B
189 198anti-parallel
Strand 7
B
166 179anti-parallel
Strand 8
B
145 155anti-parallel
Strand 9
B
128 142anti-parallel
Strand 10
B
107 114anti-parallel
Strand 11
B
72 76anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
89 98anti-parallel
Strand 3
A
35 47anti-parallel
Strand 4
B
35 47anti-parallel
Strand 5
B
89 98anti-parallel
Strand 6
B
101 104anti-parallel
Strand 7
B
128 142anti-parallel
Strand 8
B
107 114anti-parallel
Strand 9
B
72 76anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il