Analysis of interatomic Contacts of Structural Units in PDB entry:
6JSC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JSC entry

There are 2 chains in PDB entry 6JSC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 364LEU 530
B
 SER 364GLU 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 6JSC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
377 386Right-handed alpha
Helix 2
AA2
A
434 437Right-handed 310
Helix 3
AA3
A
501 508Right-handed alpha
Helix 4
AA4
B
377 386Right-handed alpha
Helix 5
AA5
B
434 437Right-handed 310
Helix 6
AA6
B
501 508Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6JSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 396first strand
Strand 2
A
428 433anti-parallel
Strand 3
A
438 450anti-parallel
Strand 4
A
420 424anti-parallel
Strand 5
A
411 415anti-parallel
Strand 6
A
365 374anti-parallel
Strand 7
A
404 409anti-parallel
Strand 8
A
399 401anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 396first strand
Strand 2
A
428 433anti-parallel
Strand 3
A
438 450anti-parallel
Strand 4
A
453 463anti-parallel
Strand 5
A
469 487anti-parallel
Strand 6
A
491 500anti-parallel
Strand 7
A
521 528anti-parallel
Strand 8
A
365 374anti-parallel
Strand 9
A
404 409anti-parallel
Strand 10
A
399 401anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 396first strand
Strand 2
B
428 433anti-parallel
Strand 3
B
438 450anti-parallel
Strand 4
B
420 424anti-parallel
Strand 5
B
411 415anti-parallel
Strand 6
B
365 374anti-parallel
Strand 7
B
404 409anti-parallel
Strand 8
B
399 401anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 396first strand
Strand 2
B
428 433anti-parallel
Strand 3
B
438 450anti-parallel
Strand 4
B
453 463anti-parallel
Strand 5
B
469 487anti-parallel
Strand 6
B
491 500anti-parallel
Strand 7
B
521 530anti-parallel
Strand 8
B
365 374anti-parallel
Strand 9
B
404 409anti-parallel
Strand 10
B
399 401anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il