Analysis of interatomic Contacts of Structural Units in PDB entry:
6JSG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JSG entry

There is 1 chain in PDB entry 6JSG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 20ILE 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6JSG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
77 81Right-handed 310
Helix 3
AA3
A
147 151Right-handed 310
Helix 4
AA4
A
159 168Right-handed alpha
Helix 5
AA5
A
204 206Right-handed 310
Helix 6
AA6
A
242 246Right-handed 310
Helix 7
AA7
A
262 276Right-handed alpha
Helix 8
AA8
A
282 287Right-handed alpha
Helix 9
AA9
A
300 304Right-handed 310
Helix 10
AB1
A
325 329Right-handed alpha
Helix 11
AB2
A
358 363Right-handed alpha
Helix 12
AB3
A
403 407Right-handed 310
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There are 5 sheets in PDB entry 6JSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 94first strand
Strand 2
A
99 110anti-parallel
Strand 3
A
39 44anti-parallel
Strand 4
A
30 33anti-parallel
Strand 5
A
193 200anti-parallel
Strand 6
A
174 178anti-parallel
Strand 7
A
365 370anti-parallel
Strand 8
A
375 381anti-parallel
Strand 9
A
208 216anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 94first strand
Strand 2
A
99 110anti-parallel
Strand 3
A
118 130anti-parallel
Strand 4
A
62 65parallel
Strand 5
A
141 144anti-parallel
Strand 6
A
49 56parallel
Strand 7
A
39 44anti-parallel
Strand 8
A
30 33anti-parallel
Strand 9
A
193 200anti-parallel
Strand 10
A
174 178anti-parallel
Strand 11
A
365 370anti-parallel
Strand 12
A
375 381anti-parallel
Strand 13
A
208 216anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
307 312anti-parallel
Strand 4
A
318 324anti-parallel
Strand 5
A
393 399anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
355 357parallel
Strand 3
A
258 261anti-parallel
Strand 4
A
348 351parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
342 346anti-parallel
Strand 3
A
330 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il