Analysis of interatomic Contacts of Structural Units in PDB entry:
6JSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JSJ entry

There are 3 chains in PDB entry 6JSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 690
B
 MET 1SER 690
C
 MET 1SER 690
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 6JSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
39 49Right-handed alpha
Helix 4
AA4
A
83 86Right-handed 310
Helix 5
AA5
A
92 104Right-handed alpha
Helix 6
AA6
A
153 161Right-handed alpha
Helix 7
AA7
A
181 191Right-handed alpha
Helix 8
AA8
A
203 207Right-handed 310
Helix 9
AA9
A
208 217Right-handed alpha
Helix 10
AB1
A
273 291Right-handed alpha
Helix 11
AB2
A
292 295Right-handed 310
Helix 12
AB3
A
301 320Right-handed alpha
Helix 13
AB4
A
320 343Right-handed alpha
Helix 14
AB5
A
349 371Right-handed alpha
Helix 15
AB6
A
374 396Right-handed alpha
Helix 16
AB7
A
402 408Right-handed 310
Helix 17
AB8
A
414 433Right-handed alpha
Helix 18
AB9
A
435 458Right-handed alpha
Helix 19
AC1
A
459 463Right-handed 310
Helix 20
AC2
A
464 481Right-handed alpha
Helix 21
AC3
A
482 494Right-handed alpha
Helix 22
AC4
A
495 498Right-handed 310
Helix 23
AC5
A
504 538Right-handed alpha
Helix 24
AC6
A
538 551Right-handed alpha
Helix 25
AC7
A
565 593Right-handed alpha
Helix 26
AC8
A
603 627Right-handed alpha
Helix 27
AC9
A
627 645Right-handed alpha
Helix 28
AD1
A
647 657Right-handed alpha
Helix 29
AD2
A
658 689Right-handed alpha
Helix 30
AD3
B
4 15Right-handed alpha
Helix 31
AD4
B
23 27Right-handed 310
Helix 32
AD5
B
39 49Right-handed alpha
Helix 33
AD6
B
92 103Right-handed alpha
Helix 34
AD7
B
155 162Right-handed alpha
Helix 35
AD8
B
177 180Right-handed 310
Helix 36
AD9
B
181 191Right-handed alpha
Helix 37
AE1
B
203 207Right-handed 310
Helix 38
AE2
B
208 217Right-handed alpha
Helix 39
AE3
B
268 272Right-handed 310
Helix 40
AE4
B
274 291Right-handed alpha
Helix 41
AE5
B
301 320Right-handed alpha
Helix 42
AE6
B
320 344Right-handed alpha
Helix 43
AE7
B
349 373Right-handed alpha
Helix 44
AE8
B
375 396Right-handed alpha
Helix 45
AE9
B
397 400Right-handed 310
Helix 46
AF1
B
404 408Right-handed 310
Helix 47
AF2
B
415 420Right-handed alpha
Helix 48
AF3
B
421 433Right-handed alpha
Helix 49
AF4
B
435 458Right-handed alpha
Helix 50
AF5
B
459 463Right-handed 310
Helix 51
AF6
B
464 481Right-handed alpha
Helix 52
AF7
B
482 493Right-handed alpha
Helix 53
AF8
B
495 499Right-handed 310
Helix 54
AF9
B
507 529Right-handed alpha
Helix 55
AG1
B
543 551Right-handed alpha
Helix 56
AG2
B
565 591Right-handed alpha
Helix 57
AG3
B
603 610Right-handed alpha
Helix 58
AG4
B
610 645Right-handed alpha
Helix 59
AG5
B
647 656Right-handed alpha
Helix 60
AG6
B
658 689Right-handed alpha
Helix 61
AG7
C
4 17Right-handed alpha
Helix 62
AG8
C
39 49Right-handed alpha
Helix 63
AG9
C
83 85Right-handed 310
Helix 64
AH1
C
93 103Right-handed alpha
Helix 65
AH2
C
153 161Right-handed alpha
Helix 66
AH3
C
181 191Right-handed alpha
Helix 67
AH4
C
210 217Right-handed alpha
Helix 68
AH5
C
271 284Right-handed alpha
Helix 69
AH6
C
286 291Right-handed alpha
Helix 70
AH7
C
292 296Right-handed 310
Helix 71
AH8
C
300 320Right-handed alpha
Helix 72
AH9
C
320 342Right-handed alpha
Helix 73
AI1
C
349 372Right-handed alpha
Helix 74
AI2
C
375 397Right-handed alpha
Helix 75
AI3
C
400 405Right-handed 310
Helix 76
AI4
C
414 433Right-handed alpha
Helix 77
AI5
C
435 459Right-handed alpha
Helix 78
AI6
C
460 463Right-handed 310
Helix 79
AI7
C
464 482Right-handed alpha
Helix 80
AI8
C
482 495Right-handed alpha
Helix 81
AI9
C
496 498Right-handed 310
Helix 82
AJ1
C
504 538Right-handed alpha
Helix 83
AJ2
C
540 552Right-handed alpha
Helix 84
AJ3
C
565 593Right-handed alpha
Helix 85
AJ4
C
603 627Right-handed alpha
Helix 86
AJ5
C
627 645Right-handed alpha
Helix 87
AJ6
C
647 657Right-handed alpha
Helix 88
AJ7
C
658 690Right-handed alpha
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There are 3 sheets in PDB entry 6JSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
65 70parallel
Strand 5
A
130 134anti-parallel
Strand 6
A
30 34parallel
Strand 7
A
167 172parallel
Strand 8
A
197 201parallel
Strand 9
A
227 229parallel
Strand 10
A
299 300parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
79 82anti-parallel
Strand 3
B
118 124anti-parallel
Strand 4
B
65 71parallel
Strand 5
B
130 134anti-parallel
Strand 6
B
30 34parallel
Strand 7
B
167 173parallel
Strand 8
B
197 202parallel
Strand 9
B
227 229parallel
Strand 10
B
299 300parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
79 82anti-parallel
Strand 3
C
118 124anti-parallel
Strand 4
C
65 71parallel
Strand 5
C
130 134anti-parallel
Strand 6
C
30 34parallel
Strand 7
C
168 171parallel
Strand 8
C
197 201parallel
Strand 9
C
226 229parallel
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