Analysis of interatomic Contacts of Structural Units in PDB entry:
6JST


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JST entry

There are 8 chains in PDB entry 6JST (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ILE 144
A
 LEU 146SER 325
B
 GLU 3ILE 144
B
 LEU 146SER 325
C
 GLU 3ILE 144
C
 LEU 146SER 325
D
 GLU 3ILE 144
D
 LEU 146GLU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 6JST. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
32 37Right-handed 310
Helix 3
AA3
A
43 61Right-handed alpha
Helix 4
AA4
A
77 89Right-handed alpha
Helix 5
AA5
A
100 104Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
117 132Right-handed alpha
Helix 8
AA8
A
154 172Right-handed alpha
Helix 9
AA9
A
184 195Right-handed alpha
Helix 10
AB1
A
198 200Right-handed 310
Helix 11
AB2
A
206 210Right-handed 310
Helix 12
AB3
A
212 221Right-handed alpha
Helix 13
AB4
A
241 255Right-handed alpha
Helix 14
AB5
A
257 259Right-handed 310
Helix 15
AB6
A
279 286Right-handed alpha
Helix 16
AB7
A
292 297Right-handed alpha
Helix 17
AB8
A
297 304Right-handed alpha
Helix 18
AB9
A
308 317Right-handed alpha
Helix 19
AC1
A
317 325Right-handed alpha
Helix 20
AC2
B
15 17Right-handed 310
Helix 21
AC3
B
32 37Right-handed 310
Helix 22
AC4
B
43 60Right-handed alpha
Helix 23
AC5
B
77 89Right-handed alpha
Helix 24
AC6
B
106 115Right-handed alpha
Helix 25
AC7
B
117 132Right-handed alpha
Helix 26
AC8
B
154 172Right-handed alpha
Helix 27
AC9
B
184 195Right-handed alpha
Helix 28
AD1
B
198 200Right-handed 310
Helix 29
AD2
B
206 210Right-handed 310
Helix 30
AD3
B
212 221Right-handed alpha
Helix 31
AD4
B
235 239Right-handed 310
Helix 32
AD5
B
241 255Right-handed alpha
Helix 33
AD6
B
257 259Right-handed 310
Helix 34
AD7
B
279 286Right-handed alpha
Helix 35
AD8
B
292 297Right-handed alpha
Helix 36
AD9
B
297 305Right-handed alpha
Helix 37
AE1
B
308 317Right-handed alpha
Helix 38
AE2
B
317 325Right-handed alpha
Helix 39
AE3
C
15 17Right-handed 310
Helix 40
AE4
C
32 37Right-handed 310
Helix 41
AE5
C
43 61Right-handed alpha
Helix 42
AE6
C
77 89Right-handed alpha
Helix 43
AE7
C
100 105Right-handed 310
Helix 44
AE8
C
106 115Right-handed alpha
Helix 45
AE9
C
117 132Right-handed alpha
Helix 46
AF1
C
154 172Right-handed alpha
Helix 47
AF2
C
184 194Right-handed alpha
Helix 48
AF3
C
198 200Right-handed 310
Helix 49
AF4
C
206 210Right-handed 310
Helix 50
AF5
C
212 221Right-handed alpha
Helix 51
AF6
C
241 255Right-handed alpha
Helix 52
AF7
C
257 259Right-handed 310
Helix 53
AF8
C
279 286Right-handed alpha
Helix 54
AF9
C
292 297Right-handed alpha
Helix 55
AG1
C
297 305Right-handed alpha
Helix 56
AG2
C
308 317Right-handed alpha
Helix 57
AG3
C
317 324Right-handed alpha
Helix 58
AG4
D
15 17Right-handed 310
Helix 59
AG5
D
32 37Right-handed 310
Helix 60
AG6
D
43 60Right-handed alpha
Helix 61
AG7
D
77 89Right-handed alpha
Helix 62
AG8
D
106 115Right-handed alpha
Helix 63
AG9
D
117 132Right-handed alpha
Helix 64
AH1
D
154 172Right-handed alpha
Helix 65
AH2
D
184 195Right-handed alpha
Helix 66
AH3
D
198 200Right-handed 310
Helix 67
AH4
D
206 210Right-handed 310
Helix 68
AH5
D
212 221Right-handed alpha
Helix 69
AH6
D
235 239Right-handed 310
Helix 70
AH7
D
241 254Right-handed alpha
Helix 71
AH8
D
257 259Right-handed 310
Helix 72
AH9
D
279 286Right-handed alpha
Helix 73
AI1
D
292 297Right-handed alpha
Helix 74
AI2
D
297 304Right-handed alpha
Helix 75
AI3
D
308 317Right-handed alpha
Helix 76
AI4
D
317 325Right-handed alpha
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There are 12 sheets in PDB entry 6JST. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
10 13anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
65 68parallel
Strand 3
A
91 97parallel
Strand 4
A
143 147parallel
Strand 5
A
174 178parallel
Strand 6
A
202 204parallel
Strand 7
A
225 228parallel
Strand 8
A
261 263parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
268 271parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
10 13anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
65 68parallel
Strand 3
B
91 97parallel
Strand 4
B
143 147parallel
Strand 5
B
174 178parallel
Strand 6
B
202 204parallel
Strand 7
B
225 228parallel
Strand 8
B
261 263parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
268 271parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
10 13anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 21first strand
Strand 2
C
65 68parallel
Strand 3
C
91 96parallel
Strand 4
C
143 150parallel
Strand 5
C
174 180parallel
Strand 6
C
202 204parallel
Strand 7
C
225 228parallel
Strand 8
C
261 263parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 28first strand
Strand 2
C
268 271parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
10 13anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
65 68parallel
Strand 3
D
91 97parallel
Strand 4
D
143 147parallel
Strand 5
D
174 178parallel
Strand 6
D
202 204parallel
Strand 7
D
225 228parallel
Strand 8
D
261 263parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 28first strand
Strand 2
D
268 271parallel
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