Analysis of interatomic Contacts of Structural Units in PDB entry:
6JT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JT1 entry

There are 2 chains in PDB entry 6JT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 69	TYR 660
B	MET 1	LYS 607

There are 42 helices in PDB entry 6JT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	83	Right-handed alpha
Helix 2	AA2	A	85	101	Right-handed alpha
Helix 3	AA3	A	115	126	Right-handed alpha
Helix 4	AA4	A	128	149	Right-handed alpha
Helix 5	AA5	A	150	156	Right-handed alpha
Helix 6	AA6	A	158	174	Right-handed alpha
Helix 7	AA7	A	210	228	Right-handed alpha
Helix 8	AA8	A	237	242	Right-handed alpha
Helix 9	AA9	A	278	286	Right-handed alpha
Helix 10	AB1	A	302	309	Right-handed alpha
Helix 11	AB2	A	319	323	Right-handed alpha
Helix 12	AB3	A	334	341	Right-handed alpha
Helix 13	AB4	A	389	394	Right-handed 310
Helix 14	AB5	A	409	419	Right-handed alpha
Helix 15	AB6	A	421	425	Right-handed 310
Helix 16	AB7	A	426	458	Right-handed alpha
Helix 17	AB8	A	459	468	Right-handed alpha
Helix 18	AB9	A	489	496	Right-handed alpha
Helix 19	AC1	A	498	521	Right-handed alpha
Helix 20	AC2	A	544	561	Right-handed alpha
Helix 21	AC3	A	598	609	Right-handed alpha
Helix 22	AC4	A	619	627	Right-handed alpha
Helix 23	AC5	B	2	30	Right-handed alpha
Helix 24	AC6	B	44	59	Right-handed alpha
Helix 25	AC7	B	62	81	Right-handed alpha
Helix 26	AC8	B	83	90	Right-handed alpha
Helix 27	AC9	B	93	100	Right-handed alpha
Helix 28	AD1	B	102	112	Right-handed alpha
Helix 29	AD2	B	144	157	Right-handed alpha
Helix 30	AD3	B	210	217	Right-handed alpha
Helix 31	AD4	B	233	240	Right-handed alpha
Helix 32	AD5	B	241	244	Right-handed 310
Helix 33	AD6	B	264	271	Right-handed alpha
Helix 34	AD7	B	329	337	Right-handed alpha
Helix 35	AD8	B	347	354	Right-handed alpha
Helix 36	AD9	B	359	395	Right-handed alpha
Helix 37	AE1	B	399	407	Right-handed alpha
Helix 38	AE2	B	429	437	Right-handed alpha
Helix 39	AE3	B	439	461	Right-handed alpha
Helix 40	AE4	B	491	508	Right-handed alpha
Helix 41	AE5	B	544	557	Right-handed alpha
Helix 42	AE6	B	566	573	Right-handed alpha

There are 10 sheets in PDB entry 6JT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	255	258	anti-parallel
Strand 4	A	232	235	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	289	292	anti-parallel
Strand 3	A	378	385	anti-parallel
Strand 4	A	364	373	anti-parallel
Strand 5	A	346	350	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	482	first strand
Strand 2	A	578	584	anti-parallel
Strand 3	A	596	597	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	573	575	anti-parallel
Strand 3	A	615	618	parallel
Strand 4	A	655	657	anti-parallel
Strand 5	A	634	636	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	533	535	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	131	135	anti-parallel
Strand 3	B	177	183	anti-parallel
Strand 4	B	162	168	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	305	313	anti-parallel
Strand 5	B	276	279	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	425	anti-parallel
Strand 4	B	521	533	anti-parallel
Strand 5	B	539	543	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	425	anti-parallel
Strand 4	B	521	533	anti-parallel
Strand 5	B	562	565	parallel
Strand 6	B	599	606	anti-parallel
Strand 7	B	582	590	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	515	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JT1