Analysis of interatomic Contacts of Structural Units in PDB entry:
6JT2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JT2 entry

There are 2 chains in PDB entry 6JT2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 67ALA 659
B
 MET 1ARG 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6JT2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
85 101Right-handed alpha
Helix 3
AA3
A
115 126Right-handed alpha
Helix 4
AA4
A
128 149Right-handed alpha
Helix 5
AA5
A
150 155Right-handed alpha
Helix 6
AA6
A
158 171Right-handed alpha
Helix 7
AA7
A
208 226Right-handed alpha
Helix 8
AA8
A
278 286Right-handed alpha
Helix 9
AA9
A
302 309Right-handed alpha
Helix 10
AB1
A
334 341Right-handed alpha
Helix 11
AB2
A
408 458Right-handed alpha
Helix 12
AB3
A
459 468Right-handed alpha
Helix 13
AB4
A
489 497Right-handed alpha
Helix 14
AB5
A
498 519Right-handed alpha
Helix 15
AB6
A
544 561Right-handed alpha
Helix 16
AB7
A
598 608Right-handed alpha
Helix 17
AB8
A
619 628Right-handed alpha
Helix 18
AB9
B
2 18Right-handed alpha
Helix 19
AC1
B
18 30Right-handed alpha
Helix 20
AC2
B
44 59Right-handed alpha
Helix 21
AC3
B
62 82Right-handed alpha
Helix 22
AC4
B
83 90Right-handed alpha
Helix 23
AC5
B
93 112Right-handed alpha
Helix 24
AC6
B
143 157Right-handed alpha
Helix 25
AC7
B
209 217Right-handed alpha
Helix 26
AC8
B
235 240Right-handed alpha
Helix 27
AC9
B
249 253Right-handed alpha
Helix 28
AD1
B
264 271Right-handed alpha
Helix 29
AD2
B
282 285Right-handed 310
Helix 30
AD3
B
329 335Right-handed alpha
Helix 31
AD4
B
339 343Right-handed 310
Helix 32
AD5
B
348 398Right-handed alpha
Helix 33
AD6
B
399 408Right-handed alpha
Helix 34
AD7
B
429 437Right-handed alpha
Helix 35
AD8
B
443 461Right-handed alpha
Helix 36
AD9
B
491 507Right-handed alpha
Helix 37
AE1
B
544 557Right-handed alpha
Helix 38
AE2
B
566 573Right-handed alpha
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There are 8 sheets in PDB entry 6JT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
253 257anti-parallel
Strand 3
A
233 234anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
289 292anti-parallel
Strand 3
A
378 385anti-parallel
Strand 4
A
364 373anti-parallel
Strand 5
A
346 350anti-parallel
Strand 6
A
324 326anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 525first strand
Strand 2
A
533 536anti-parallel
Strand 3
A
475 487anti-parallel
Strand 4
A
573 584anti-parallel
Strand 5
A
615 618parallel
Strand 6
A
655 657anti-parallel
Strand 7
A
634 636anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 124first strand
Strand 2
B
131 136anti-parallel
Strand 3
B
177 183anti-parallel
Strand 4
B
162 166anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 231first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
318 325anti-parallel
Strand 4
B
305 313anti-parallel
Strand 5
B
276 280anti-parallel
Strand 6
B
254 258anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 416first strand
Strand 2
B
529 531anti-parallel
Strand 3
B
541 543anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 474first strand
Strand 2
B
478 483anti-parallel
Strand 3
B
420 427anti-parallel
Strand 4
B
519 526anti-parallel
Strand 5
B
562 565parallel
Strand 6
B
599 605anti-parallel
Strand 7
B
583 590anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 512first strand
Strand 2
B
515 516anti-parallel
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