Analysis of interatomic Contacts of Structural Units in PDB entry:
6JT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JT8 entry

There are 2 chains in PDB entry 6JT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -7VAL 1134
A
 ASN 1136GLY 1295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 6JT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
48 59Right-handed alpha
Helix 3
AA3
A
85 98Right-handed alpha
Helix 4
AA4
A
120 131Right-handed alpha
Helix 5
AA5
A
142 151Right-handed 310
Helix 6
AA6
A
162 167Right-handed alpha
Helix 7
AA7
A
168 178Right-handed alpha
Helix 8
AA8
A
183 198Right-handed alpha
Helix 9
AA9
A
202 213Right-handed alpha
Helix 10
AB1
A
214 219Right-handed alpha
Helix 11
AB2
A
219 224Right-handed alpha
Helix 12
AB3
A
236 248Right-handed alpha
Helix 13
AB4
A
296 303Right-handed alpha
Helix 14
AB5
A
303 321Right-handed alpha
Helix 15
AB6
A
361 381Right-handed alpha
Helix 16
AB7
A
421 425Right-handed 310
Helix 17
AB8
A
466 470Right-handed 310
Helix 18
AB9
A
474 490Right-handed alpha
Helix 19
AC1
A
491 495Right-handed 310
Helix 20
AC2
A
507 519Right-handed alpha
Helix 21
AC3
A
528 530Right-handed 310
Helix 22
AC4
A
538 545Right-handed alpha
Helix 23
AC5
A
559 571Right-handed alpha
Helix 24
AC6
A
602 606Right-handed alpha
Helix 25
AC7
A
632 642Right-handed alpha
Helix 26
AC8
A
649 654Right-handed alpha
Helix 27
AC9
A
701 706Right-handed 310
Helix 28
AD1
A
707 724Right-handed alpha
Helix 29
AD2
A
730 733Right-handed 310
Helix 30
AD3
A
748 762Right-handed alpha
Helix 31
AD4
A
763 769Right-handed alpha
Helix 32
AD5
A
810 814Right-handed 310
Helix 33
AD6
A
841 847Right-handed alpha
Helix 34
AD7
A
859 876Right-handed alpha
Helix 35
AD8
A
888 902Right-handed alpha
Helix 36
AD9
A
910 913Right-handed 310
Helix 37
AE1
A
915 922Right-handed alpha
Helix 38
AE2
A
935 946Right-handed alpha
Helix 39
AE3
A
947 950Right-handed 310
Helix 40
AE4
A
978 997Right-handed alpha
Helix 41
AE5
A
998 1010Right-handed alpha
Helix 42
AE6
A
1030 1036Right-handed alpha
Helix 43
AE7
A
1052 1063Right-handed alpha
Helix 44
AE8
A
1072 1077Right-handed alpha
Helix 45
AE9
A
1081 1085Right-handed 310
Helix 46
AF1
A
1094 1099Right-handed 310
Helix 47
AF2
A
1103 1112Right-handed alpha
Helix 48
AF3
A
1113 1126Right-handed alpha
Helix 49
AF4
A
1135 1144Right-handed alpha
Helix 50
AF5
A
1145 1148Right-handed 310
Helix 51
AF6
A
1179 1183Right-handed 310
Helix 52
AF7
A
1205 1216Right-handed alpha
Helix 53
AF8
A
1240 1242Right-handed 310
Helix 54
AF9
A
1260 1264Right-handed 310
Helix 55
AG1
A
1266 1270Right-handed 310
Helix 56
AG2
A
1283 1295Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 6JT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-6 -3first strand
Strand 2
A
0 9anti-parallel
Strand 3
A
32 43anti-parallel
Strand 4
A
103 115anti-parallel
Strand 5
A
73 79anti-parallel
Strand 6
A
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
225 228anti-parallel
Strand 3
A
613 616parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
261 273anti-parallel
Strand 3
A
280 295anti-parallel
Strand 4
A
411 420anti-parallel
Strand 5
A
327 337anti-parallel
Strand 6
A
384 391parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
401 406anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 502first strand
Strand 2
A
550 555anti-parallel
Strand 3
A
435 440anti-parallel
Strand 4
A
574 581anti-parallel
Strand 5
A
522 526anti-parallel
Strand 6
A
585 590parallel
Strand 7
A
595 601anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 666first strand
Strand 2
A
681 684anti-parallel
Strand 3
A
692 699anti-parallel
Strand 4
A
799 808anti-parallel
Strand 5
A
735 741anti-parallel
Strand 6
A
771 778parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 670first strand
Strand 2
A
675 676anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
782 787first strand
Strand 2
A
790 795anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
881 884first strand
Strand 2
A
926 932anti-parallel
Strand 3
A
824 830anti-parallel
Strand 4
A
952 959anti-parallel
Strand 5
A
904 908anti-parallel
Strand 6
A
963 968parallel
Strand 7
A
971 977anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1066 1071first strand
Strand 2
A
1041 1046parallel
Strand 3
A
1087 1090parallel
Strand 4
A
1130 1134parallel
Strand 5
A
1254 1257parallel
Strand 6
A
1244 1248anti-parallel
Strand 7
A
1218 1222anti-parallel
Strand 8
A
1166 1174anti-parallel
Strand 9
A
1189 1196anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1158first strand
Strand 2
A
1200 1202anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il