Analysis of interatomic Contacts of Structural Units in PDB entry:
6JTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JTD entry

There are 2 chains in PDB entry 6JTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5LYS 481
B
 SER 10HIS 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6JTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 38Right-handed alpha
Helix 2
AA2
A
53 65Right-handed alpha
Helix 3
AA3
A
80 86Right-handed alpha
Helix 4
AA4
A
89 100Right-handed alpha
Helix 5
AA5
A
101 111Right-handed alpha
Helix 6
AA6
A
125 127Right-handed 310
Helix 7
AA7
A
128 135Right-handed alpha
Helix 8
AA8
A
146 163Right-handed alpha
Helix 9
AA9
A
166 170Right-handed 310
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
188 193Right-handed 310
Helix 12
AB3
A
198 210Right-handed alpha
Helix 13
AB4
A
224 234Right-handed alpha
Helix 14
AB5
A
234 239Right-handed alpha
Helix 15
AB6
A
262 269Right-handed alpha
Helix 16
AB7
A
288 303Right-handed alpha
Helix 17
AB8
A
330 336Right-handed 310
Helix 18
AB9
A
339 344Right-handed alpha
Helix 19
AC1
A
356 363Right-handed alpha
Helix 20
AC2
A
374 384Right-handed alpha
Helix 21
AC3
A
396 407Right-handed alpha
Helix 22
AC4
A
424 437Right-handed alpha
Helix 23
AC5
A
438 460Right-handed alpha
Helix 24
AC6
A
463 481Right-handed alpha
Helix 25
AC7
B
21 37Right-handed alpha
Helix 26
AC8
B
53 65Right-handed alpha
Helix 27
AC9
B
79 86Right-handed alpha
Helix 28
AD1
B
89 111Right-handed alpha
Helix 29
AD2
B
125 127Right-handed 310
Helix 30
AD3
B
128 136Right-handed alpha
Helix 31
AD4
B
146 163Right-handed alpha
Helix 32
AD5
B
166 170Right-handed 310
Helix 33
AD6
B
183 187Right-handed 310
Helix 34
AD7
B
188 193Right-handed 310
Helix 35
AD8
B
198 210Right-handed alpha
Helix 36
AD9
B
224 234Right-handed alpha
Helix 37
AE1
B
234 239Right-handed alpha
Helix 38
AE2
B
262 270Right-handed alpha
Helix 39
AE3
B
288 303Right-handed alpha
Helix 40
AE4
B
331 336Right-handed 310
Helix 41
AE5
B
339 344Right-handed alpha
Helix 42
AE6
B
356 363Right-handed alpha
Helix 43
AE7
B
374 384Right-handed alpha
Helix 44
AE8
B
396 407Right-handed alpha
Helix 45
AE9
B
424 437Right-handed alpha
Helix 46
AF1
B
438 460Right-handed alpha
Helix 47
AF2
B
463 480Right-handed alpha
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There are 5 sheets in PDB entry 6JTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
42 47parallel
Strand 3
A
13 18parallel
Strand 4
A
118 121parallel
Strand 5
A
138 143parallel
Strand 6
A
214 217parallel
Strand 7
A
245 247parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
179 182anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 352first strand
Strand 2
A
305 310parallel
Strand 3
A
276 280parallel
Strand 4
A
366 371parallel
Strand 5
A
388 390parallel
Strand 6
A
411 412parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
42 47parallel
Strand 3
B
13 18parallel
Strand 4
B
118 121parallel
Strand 5
B
138 143parallel
Strand 6
B
214 217parallel
Strand 7
B
245 247parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 352first strand
Strand 2
B
305 310parallel
Strand 3
B
276 280parallel
Strand 4
B
366 371parallel
Strand 5
B
388 390parallel
Strand 6
B
411 412parallel
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