Analysis of interatomic Contacts of Structural Units in PDB entry:
6JTI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JTI entry

There are 6 chains in PDB entry 6JTI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	PRO 348
B	VAL 3	PRO 348
C	THR 2	SER 347
D	THR 2	PRO 348
E	VAL 3	SER 347
F	VAL 3	SER 347

There are 90 helices in PDB entry 6JTI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	29	Right-handed alpha
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	45	59	Right-handed alpha
Helix 4	AA4	A	87	99	Right-handed alpha
Helix 5	AA5	A	99	120	Right-handed alpha
Helix 6	AA6	A	141	145	Right-handed 310
Helix 7	AA7	A	149	167	Right-handed alpha
Helix 8	AA8	A	196	203	Right-handed alpha
Helix 9	AA9	A	205	214	Right-handed alpha
Helix 10	AB1	A	237	242	Right-handed alpha
Helix 11	AB2	A	271	282	Right-handed alpha
Helix 12	AB3	A	291	300	Right-handed alpha
Helix 13	AB4	A	309	317	Right-handed alpha
Helix 14	AB5	A	322	332	Right-handed alpha
Helix 15	AB6	A	332	347	Right-handed alpha
Helix 16	AB7	B	21	29	Right-handed alpha
Helix 17	AB8	B	39	43	Right-handed 310
Helix 18	AB9	B	45	59	Right-handed alpha
Helix 19	AC1	B	88	99	Right-handed alpha
Helix 20	AC2	B	99	120	Right-handed alpha
Helix 21	AC3	B	141	145	Right-handed 310
Helix 22	AC4	B	149	167	Right-handed alpha
Helix 23	AC5	B	196	203	Right-handed alpha
Helix 24	AC6	B	205	214	Right-handed alpha
Helix 25	AC7	B	237	242	Right-handed alpha
Helix 26	AC8	B	269	282	Right-handed alpha
Helix 27	AC9	B	291	300	Right-handed alpha
Helix 28	AD1	B	309	317	Right-handed alpha
Helix 29	AD2	B	322	332	Right-handed alpha
Helix 30	AD3	B	332	346	Right-handed alpha
Helix 31	AD4	C	21	29	Right-handed alpha
Helix 32	AD5	C	39	43	Right-handed 310
Helix 33	AD6	C	45	59	Right-handed alpha
Helix 34	AD7	C	88	99	Right-handed alpha
Helix 35	AD8	C	99	120	Right-handed alpha
Helix 36	AD9	C	141	145	Right-handed 310
Helix 37	AE1	C	149	167	Right-handed alpha
Helix 38	AE2	C	196	203	Right-handed alpha
Helix 39	AE3	C	205	214	Right-handed alpha
Helix 40	AE4	C	237	242	Right-handed alpha
Helix 41	AE5	C	271	282	Right-handed alpha
Helix 42	AE6	C	291	300	Right-handed alpha
Helix 43	AE7	C	309	317	Right-handed alpha
Helix 44	AE8	C	322	332	Right-handed alpha
Helix 45	AE9	C	332	347	Right-handed alpha
Helix 46	AF1	D	21	29	Right-handed alpha
Helix 47	AF2	D	39	43	Right-handed 310
Helix 48	AF3	D	45	59	Right-handed alpha
Helix 49	AF4	D	87	99	Right-handed alpha
Helix 50	AF5	D	99	120	Right-handed alpha
Helix 51	AF6	D	141	145	Right-handed 310
Helix 52	AF7	D	149	167	Right-handed alpha
Helix 53	AF8	D	196	203	Right-handed alpha
Helix 54	AF9	D	205	214	Right-handed alpha
Helix 55	AG1	D	237	242	Right-handed alpha
Helix 56	AG2	D	269	282	Right-handed alpha
Helix 57	AG3	D	291	300	Right-handed alpha
Helix 58	AG4	D	309	317	Right-handed alpha
Helix 59	AG5	D	322	332	Right-handed alpha
Helix 60	AG6	D	332	347	Right-handed alpha
Helix 61	AG7	E	21	29	Right-handed alpha
Helix 62	AG8	E	39	43	Right-handed 310
Helix 63	AG9	E	45	59	Right-handed alpha
Helix 64	AH1	E	87	99	Right-handed alpha
Helix 65	AH2	E	99	120	Right-handed alpha
Helix 66	AH3	E	141	145	Right-handed 310
Helix 67	AH4	E	149	167	Right-handed alpha
Helix 68	AH5	E	196	203	Right-handed alpha
Helix 69	AH6	E	205	214	Right-handed alpha
Helix 70	AH7	E	237	242	Right-handed alpha
Helix 71	AH8	E	270	282	Right-handed alpha
Helix 72	AH9	E	291	300	Right-handed alpha
Helix 73	AI1	E	309	317	Right-handed alpha
Helix 74	AI2	E	322	332	Right-handed alpha
Helix 75	AI3	E	332	347	Right-handed alpha
Helix 76	AI4	F	21	29	Right-handed alpha
Helix 77	AI5	F	39	43	Right-handed 310
Helix 78	AI6	F	45	59	Right-handed alpha
Helix 79	AI7	F	87	99	Right-handed alpha
Helix 80	AI8	F	99	120	Right-handed alpha
Helix 81	AI9	F	141	145	Right-handed 310
Helix 82	AJ1	F	149	167	Right-handed alpha
Helix 83	AJ2	F	196	203	Right-handed alpha
Helix 84	AJ3	F	205	214	Right-handed alpha
Helix 85	AJ4	F	237	242	Right-handed alpha
Helix 86	AJ5	F	270	282	Right-handed alpha
Helix 87	AJ6	F	291	300	Right-handed alpha
Helix 88	AJ7	F	309	317	Right-handed alpha
Helix 89	AJ8	F	322	332	Right-handed alpha
Helix 90	AJ9	F	334	347	Right-handed alpha

There are 19 sheets in PDB entry 6JTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	65	68	parallel
Strand 3	A	33	38	parallel
Strand 4	A	11	13	parallel
Strand 5	A	285	287	parallel
Strand 6	A	254	259	parallel
Strand 7	A	218	221	parallel
Strand 8	A	172	176	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	230	233	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	65	68	parallel
Strand 3	B	33	38	parallel
Strand 4	B	11	14	parallel
Strand 5	B	285	287	parallel
Strand 6	B	254	259	parallel
Strand 7	B	218	221	parallel
Strand 8	B	172	176	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	230	233	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	65	68	parallel
Strand 3	C	33	38	parallel
Strand 4	C	11	14	parallel
Strand 5	C	286	287	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	218	221	parallel
Strand 3	C	254	255	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	230	233	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	65	68	parallel
Strand 3	D	33	38	parallel
Strand 4	D	11	14	parallel
Strand 5	D	285	287	parallel
Strand 6	D	254	259	parallel
Strand 7	D	218	221	parallel
Strand 8	D	172	176	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	230	233	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	126	first strand
Strand 2	E	65	68	parallel
Strand 3	E	33	38	parallel
Strand 4	E	11	14	parallel
Strand 5	E	285	287	parallel
Strand 6	E	254	259	parallel
Strand 7	E	218	221	parallel
Strand 8	E	172	176	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	226	first strand
Strand 2	E	230	233	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	126	first strand
Strand 2	F	65	68	parallel
Strand 3	F	33	38	parallel
Strand 4	F	11	14	parallel
Strand 5	F	285	287	parallel
Strand 6	F	254	259	parallel
Strand 7	F	218	221	parallel
Strand 8	F	172	176	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	226	first strand
Strand 2	F	230	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JTI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JTI