Analysis of interatomic Contacts of Structural Units in PDB entry:
6JTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JTL entry

There are 2 chains in PDB entry 6JTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3SER 347
B
 VAL 3SER 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6JTL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
39 43Right-handed 310
Helix 3
AA3
A
45 59Right-handed alpha
Helix 4
AA4
A
87 99Right-handed alpha
Helix 5
AA5
A
99 120Right-handed alpha
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
149 167Right-handed alpha
Helix 8
AA8
A
196 203Right-handed alpha
Helix 9
AA9
A
205 214Right-handed alpha
Helix 10
AB1
A
237 242Right-handed alpha
Helix 11
AB2
A
271 282Right-handed alpha
Helix 12
AB3
A
291 300Right-handed alpha
Helix 13
AB4
A
309 317Right-handed alpha
Helix 14
AB5
A
322 332Right-handed alpha
Helix 15
AB6
A
332 347Right-handed alpha
Helix 16
AB7
B
21 29Right-handed alpha
Helix 17
AB8
B
39 43Right-handed 310
Helix 18
AB9
B
45 59Right-handed alpha
Helix 19
AC1
B
87 99Right-handed alpha
Helix 20
AC2
B
99 120Right-handed alpha
Helix 21
AC3
B
141 145Right-handed 310
Helix 22
AC4
B
149 167Right-handed alpha
Helix 23
AC5
B
196 203Right-handed alpha
Helix 24
AC6
B
205 214Right-handed alpha
Helix 25
AC7
B
237 242Right-handed alpha
Helix 26
AC8
B
272 282Right-handed alpha
Helix 27
AC9
B
291 300Right-handed alpha
Helix 28
AD1
B
309 317Right-handed alpha
Helix 29
AD2
B
322 332Right-handed alpha
Helix 30
AD3
B
332 347Right-handed alpha
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There are 8 sheets in PDB entry 6JTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
65 68parallel
Strand 3
A
33 38parallel
Strand 4
A
11 13parallel
Strand 5
A
286 287parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
218 221parallel
Strand 3
A
254 255parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
230 233anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
65 68parallel
Strand 3
B
33 38parallel
Strand 4
B
11 13parallel
Strand 5
B
286 287parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
75 76anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 176first strand
Strand 2
B
218 221parallel
Strand 3
B
254 255parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
230 233anti-parallel
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