Analysis of interatomic Contacts of Structural Units in PDB entry:
6JUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JUB entry

There are 2 chains in PDB entry 6JUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 616
B
 SER 1ALA 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6JUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 31Right-handed alpha
Helix 2
AA2
A
36 52Right-handed alpha
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
98 126Right-handed alpha
Helix 5
AA5
A
127 129Right-handed 310
Helix 6
AA6
A
130 141Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
A
226 230Right-handed 310
Helix 10
AB1
A
243 250Right-handed 310
Helix 11
AB2
A
253 262Right-handed alpha
Helix 12
AB3
A
265 270Right-handed 310
Helix 13
AB4
A
277 289Right-handed alpha
Helix 14
AB5
A
293 299Right-handed alpha
Helix 15
AB6
A
317 321Right-handed 310
Helix 16
AB7
A
323 337Right-handed alpha
Helix 17
AB8
A
355 358Right-handed 310
Helix 18
AB9
A
361 365Right-handed 310
Helix 19
AC1
A
366 386Right-handed alpha
Helix 20
AC2
A
396 402Right-handed 310
Helix 21
AC3
A
421 426Right-handed 310
Helix 22
AC4
A
427 432Right-handed 310
Helix 23
AC5
A
435 440Right-handed alpha
Helix 24
AC6
A
443 453Right-handed alpha
Helix 25
AC7
A
541 552Right-handed alpha
Helix 26
AC8
A
611 615Right-handed 310
Helix 27
AC9
B
21 28Right-handed alpha
Helix 28
AD1
B
37 52Right-handed alpha
Helix 29
AD2
B
59 66Right-handed alpha
Helix 30
AD3
B
98 126Right-handed alpha
Helix 31
AD4
B
127 129Right-handed 310
Helix 32
AD5
B
130 141Right-handed alpha
Helix 33
AD6
B
168 172Right-handed 310
Helix 34
AD7
B
201 205Right-handed 310
Helix 35
AD8
B
226 230Right-handed 310
Helix 36
AD9
B
243 250Right-handed 310
Helix 37
AE1
B
253 262Right-handed alpha
Helix 38
AE2
B
265 270Right-handed 310
Helix 39
AE3
B
277 289Right-handed alpha
Helix 40
AE4
B
293 299Right-handed alpha
Helix 41
AE5
B
317 322Right-handed 310
Helix 42
AE6
B
323 337Right-handed alpha
Helix 43
AE7
B
355 358Right-handed 310
Helix 44
AE8
B
361 365Right-handed 310
Helix 45
AE9
B
366 386Right-handed alpha
Helix 46
AF1
B
393 398Right-handed alpha
Helix 47
AF2
B
421 426Right-handed 310
Helix 48
AF3
B
427 432Right-handed 310
Helix 49
AF4
B
443 453Right-handed alpha
Helix 50
AF5
B
453 461Right-handed alpha
Helix 51
AF6
B
541 552Right-handed alpha
Helix 52
AF7
B
611 615Right-handed 310
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There are 11 sheets in PDB entry 6JUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
187 190anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
534 540anti-parallel
Strand 3
A
468 474anti-parallel
Strand 4
A
577 582anti-parallel
Strand 5
A
600 604anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
352 353anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
416 419anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 512first strand
Strand 2
A
484 490anti-parallel
Strand 3
A
559 564anti-parallel
Strand 4
A
606 607parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
88 89anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 178first strand
Strand 2
B
186 190anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 302first strand
Strand 2
B
534 540anti-parallel
Strand 3
B
467 474anti-parallel
Strand 4
B
576 583anti-parallel
Strand 5
B
600 604anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
352 353anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 411first strand
Strand 2
B
416 419anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 512first strand
Strand 2
B
484 490anti-parallel
Strand 3
B
559 564anti-parallel
Strand 4
B
606 607parallel
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