Analysis of interatomic Contacts of Structural Units in PDB entry:
6JUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JUJ entry

There are 2 chains in PDB entry 6JUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TYR 382
B
 ALA 2ALA 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6JUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 59Right-handed 310
Helix 2
AA2
A
60 66Right-handed alpha
Helix 3
AA3
A
82 89Right-handed alpha
Helix 4
AA4
A
105 112Right-handed alpha
Helix 5
AA5
A
129 136Right-handed alpha
Helix 6
AA6
A
147 165Right-handed alpha
Helix 7
AA7
A
165 175Right-handed alpha
Helix 8
AA8
A
179 185Right-handed alpha
Helix 9
AA9
A
201 212Right-handed alpha
Helix 10
AB1
A
213 215Right-handed 310
Helix 11
AB2
A
227 235Right-handed alpha
Helix 12
AB3
A
241 246Right-handed alpha
Helix 13
AB4
A
247 249Right-handed 310
Helix 14
AB5
A
259 263Right-handed 310
Helix 15
AB6
A
267 272Right-handed alpha
Helix 16
AB7
A
285 289Right-handed 310
Helix 17
AB8
A
290 300Right-handed alpha
Helix 18
AB9
A
320 324Right-handed 310
Helix 19
AC1
A
334 337Right-handed 310
Helix 20
AC2
A
338 359Right-handed alpha
Helix 21
AC3
A
363 365Right-handed 310
Helix 22
AC4
A
375 382Right-handed alpha
Helix 23
AC5
B
56 59Right-handed 310
Helix 24
AC6
B
60 66Right-handed alpha
Helix 25
AC7
B
82 89Right-handed alpha
Helix 26
AC8
B
105 112Right-handed alpha
Helix 27
AC9
B
129 136Right-handed alpha
Helix 28
AD1
B
147 164Right-handed alpha
Helix 29
AD2
B
165 175Right-handed alpha
Helix 30
AD3
B
179 185Right-handed alpha
Helix 31
AD4
B
201 212Right-handed alpha
Helix 32
AD5
B
213 215Right-handed 310
Helix 33
AD6
B
227 235Right-handed alpha
Helix 34
AD7
B
241 246Right-handed alpha
Helix 35
AD8
B
247 249Right-handed 310
Helix 36
AD9
B
259 263Right-handed 310
Helix 37
AE1
B
269 274Right-handed 310
Helix 38
AE2
B
285 289Right-handed 310
Helix 39
AE3
B
290 300Right-handed alpha
Helix 40
AE4
B
320 324Right-handed 310
Helix 41
AE5
B
334 337Right-handed 310
Helix 42
AE6
B
338 359Right-handed alpha
Helix 43
AE7
B
363 365Right-handed 310
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There are 4 sheets in PDB entry 6JUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
3 7parallel
Strand 3
A
93 96parallel
Strand 4
A
117 120parallel
Strand 5
A
139 142parallel
Strand 6
A
367 370anti-parallel
Strand 7
A
373 374anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
217 220parallel
Strand 3
A
194 197parallel
Strand 4
A
251 254parallel
Strand 5
A
278 282parallel
Strand 6
A
303 307parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
3 7parallel
Strand 3
B
93 96parallel
Strand 4
B
117 120parallel
Strand 5
B
139 142parallel
Strand 6
B
367 370anti-parallel
Strand 7
B
373 374anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
217 220parallel
Strand 3
B
194 197parallel
Strand 4
B
251 254parallel
Strand 5
B
278 282parallel
Strand 6
B
303 308parallel
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