Analysis of interatomic Contacts of Structural Units in PDB entry:
6JUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JUO entry

There are 6 chains in PDB entry 6JUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 347
B
 C 838 G 850
C
 G 862 C 873
F
 MET 1VAL 347
G
 C 838 A 848
H
 T 866 C 873
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6JUO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
49 54Right-handed alpha
Helix 4
AA4
A
62 70Right-handed alpha
Helix 5
AA5
A
79 96Right-handed alpha
Helix 6
AA6
A
120 137Right-handed alpha
Helix 7
AA7
A
147 159Right-handed alpha
Helix 8
AA8
A
170 176Right-handed alpha
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
187 197Right-handed alpha
Helix 11
AB2
A
201 207Right-handed alpha
Helix 12
AB3
A
209 218Right-handed alpha
Helix 13
AB4
A
220 230Right-handed alpha
Helix 14
AB5
A
259 281Right-handed alpha
Helix 15
AB6
A
312 326Right-handed alpha
Helix 16
AB7
F
12 21Right-handed alpha
Helix 17
AB8
F
22 26Right-handed 310
Helix 18
AB9
F
49 54Right-handed alpha
Helix 19
AC1
F
62 70Right-handed alpha
Helix 20
AC2
F
79 96Right-handed alpha
Helix 21
AC3
F
121 137Right-handed alpha
Helix 22
AC4
F
147 159Right-handed alpha
Helix 23
AC5
F
170 176Right-handed alpha
Helix 24
AC6
F
179 183Right-handed 310
Helix 25
AC7
F
187 197Right-handed alpha
Helix 26
AC8
F
201 207Right-handed alpha
Helix 27
AC9
F
209 218Right-handed alpha
Helix 28
AD1
F
220 230Right-handed alpha
Helix 29
AD2
F
259 281Right-handed alpha
Helix 30
AD3
F
312 326Right-handed alpha
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There are 6 sheets in PDB entry 6JUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
108 115anti-parallel
Strand 3
A
2 10anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
163 165parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
30 32anti-parallel
Strand 3
A
74 76parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 257first strand
Strand 2
A
333 342anti-parallel
Strand 3
A
285 294anti-parallel
Strand 4
A
299 310anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
101 104first strand
Strand 2
F
108 115anti-parallel
Strand 3
F
2 10anti-parallel
Strand 4
F
140 145anti-parallel
Strand 5
F
163 165parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
47 48first strand
Strand 2
F
30 32anti-parallel
Strand 3
F
74 76parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
246 257first strand
Strand 2
F
333 342anti-parallel
Strand 3
F
285 294anti-parallel
Strand 4
F
299 310anti-parallel
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