Analysis of interatomic Contacts of Structural Units in PDB entry:
6JUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JUV entry

There are 2 chains in PDB entry 6JUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 0GLU 191
B
 ASP 1ASP 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6JUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
23 31Right-handed alpha
Helix 3
AA3
A
34 53Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
78 82Right-handed 310
Helix 6
AA6
A
88 102Right-handed alpha
Helix 7
AA7
A
106 112Right-handed alpha
Helix 8
AA8
A
113 115Right-handed 310
Helix 9
AA9
A
116 127Right-handed alpha
Helix 10
AB1
A
144 152Right-handed alpha
Helix 11
AB2
A
157 173Right-handed alpha
Helix 12
AB3
A
173 191Right-handed alpha
Helix 13
AB4
B
2 18Right-handed alpha
Helix 14
AB5
B
23 31Right-handed alpha
Helix 15
AB6
B
34 52Right-handed alpha
Helix 16
AB7
B
71 76Right-handed alpha
Helix 17
AB8
B
78 82Right-handed 310
Helix 18
AB9
B
88 102Right-handed alpha
Helix 19
AC1
B
106 114Right-handed alpha
Helix 20
AC2
B
115 127Right-handed alpha
Helix 21
AC3
B
144 151Right-handed alpha
Helix 22
AC4
B
157 173Right-handed alpha
Helix 23
AC5
B
173 185Right-handed alpha
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There are 4 sheets in PDB entry 6JUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
56 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
130 135anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
65 70anti-parallel
Strand 3
B
56 61anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
130 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il