Analysis of interatomic Contacts of Structural Units in PDB entry:
6JUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JUY entry

There are 4 chains in PDB entry 6JUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	ARG 697
B	ASP 3	ARG 697
C	ASP 4	TYR 699
D	ASP 3	THR 696

There are110 helices in PDB entry 6JUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	50	Right-handed alpha
Helix 2	AA2	A	63	71	Right-handed 310
Helix 3	AA3	A	87	92	Right-handed 310
Helix 4	AA4	A	93	104	Right-handed alpha
Helix 5	AA5	A	118	121	Right-handed 310
Helix 6	AA6	A	141	143	Right-handed 310
Helix 7	AA7	A	144	153	Right-handed alpha
Helix 8	AA8	A	168	171	Right-handed 310
Helix 9	AA9	A	185	188	Right-handed 310
Helix 10	AB1	A	189	200	Right-handed alpha
Helix 11	AB2	A	201	203	Right-handed 310
Helix 12	AB3	A	209	215	Right-handed alpha
Helix 13	AB4	A	233	243	Right-handed alpha
Helix 14	AB5	A	252	257	Right-handed alpha
Helix 15	AB6	A	298	310	Right-handed alpha
Helix 16	AB7	A	339	352	Right-handed alpha
Helix 17	AB8	A	471	488	Right-handed alpha
Helix 18	AB9	A	498	503	Right-handed alpha
Helix 19	AC1	A	505	515	Right-handed alpha
Helix 20	AC2	A	525	538	Right-handed alpha
Helix 21	AC3	A	555	569	Right-handed alpha
Helix 22	AC4	A	570	577	Right-handed alpha
Helix 23	AC5	A	583	591	Right-handed alpha
Helix 24	AC6	A	613	626	Right-handed alpha
Helix 25	AC7	A	636	647	Right-handed alpha
Helix 26	AC8	A	680	694	Right-handed alpha
Helix 27	AC9	B	34	50	Right-handed alpha
Helix 28	AD1	B	63	71	Right-handed 310
Helix 29	AD2	B	90	92	Right-handed 310
Helix 30	AD3	B	93	104	Right-handed alpha
Helix 31	AD4	B	118	121	Right-handed 310
Helix 32	AD5	B	141	143	Right-handed 310
Helix 33	AD6	B	144	153	Right-handed alpha
Helix 34	AD7	B	168	171	Right-handed 310
Helix 35	AD8	B	185	188	Right-handed 310
Helix 36	AD9	B	189	200	Right-handed alpha
Helix 37	AE1	B	201	203	Right-handed 310
Helix 38	AE2	B	209	215	Right-handed alpha
Helix 39	AE3	B	233	244	Right-handed alpha
Helix 40	AE4	B	252	257	Right-handed alpha
Helix 41	AE5	B	262	266	Right-handed 310
Helix 42	AE6	B	298	310	Right-handed alpha
Helix 43	AE7	B	341	353	Right-handed alpha
Helix 44	AE8	B	358	362	Right-handed 310
Helix 45	AE9	B	467	488	Right-handed alpha
Helix 46	AF1	B	498	503	Right-handed alpha
Helix 47	AF2	B	505	515	Right-handed alpha
Helix 48	AF3	B	525	538	Right-handed alpha
Helix 49	AF4	B	555	569	Right-handed alpha
Helix 50	AF5	B	570	577	Right-handed alpha
Helix 51	AF6	B	583	591	Right-handed alpha
Helix 52	AF7	B	613	626	Right-handed alpha
Helix 53	AF8	B	636	647	Right-handed alpha
Helix 54	AF9	B	680	693	Right-handed alpha
Helix 55	AG1	C	33	50	Right-handed alpha
Helix 56	AG2	C	63	71	Right-handed 310
Helix 57	AG3	C	87	91	Right-handed 310
Helix 58	AG4	C	93	104	Right-handed alpha
Helix 59	AG5	C	118	121	Right-handed 310
Helix 60	AG6	C	141	143	Right-handed 310
Helix 61	AG7	C	144	153	Right-handed alpha
Helix 62	AG8	C	168	171	Right-handed 310
Helix 63	AG9	C	185	188	Right-handed 310
Helix 64	AH1	C	189	200	Right-handed alpha
Helix 65	AH2	C	201	203	Right-handed 310
Helix 66	AH3	C	209	215	Right-handed alpha
Helix 67	AH4	C	233	243	Right-handed alpha
Helix 68	AH5	C	252	257	Right-handed alpha
Helix 69	AH6	C	274	278	Right-handed 310
Helix 70	AH7	C	298	310	Right-handed alpha
Helix 71	AH8	C	341	352	Right-handed alpha
Helix 72	AH9	C	357	362	Right-handed alpha
Helix 73	AI1	C	470	488	Right-handed alpha
Helix 74	AI2	C	497	503	Right-handed alpha
Helix 75	AI3	C	505	515	Right-handed alpha
Helix 76	AI4	C	525	538	Right-handed alpha
Helix 77	AI5	C	555	569	Right-handed alpha
Helix 78	AI6	C	570	577	Right-handed alpha
Helix 79	AI7	C	583	591	Right-handed alpha
Helix 80	AI8	C	613	626	Right-handed alpha
Helix 81	AI9	C	636	647	Right-handed alpha
Helix 82	AJ1	C	660	664	Right-handed 310
Helix 83	AJ2	C	680	697	Right-handed alpha
Helix 84	AJ3	D	34	50	Right-handed alpha
Helix 85	AJ4	D	63	71	Right-handed 310
Helix 86	AJ5	D	92	104	Right-handed alpha
Helix 87	AJ6	D	118	121	Right-handed 310
Helix 88	AJ7	D	141	143	Right-handed 310
Helix 89	AJ8	D	144	153	Right-handed alpha
Helix 90	AJ9	D	168	171	Right-handed 310
Helix 91	AK1	D	177	179	Right-handed 310
Helix 92	AK2	D	185	188	Right-handed 310
Helix 93	AK3	D	189	200	Right-handed alpha
Helix 94	AK4	D	201	203	Right-handed 310
Helix 95	AK5	D	209	215	Right-handed alpha
Helix 96	AK6	D	233	243	Right-handed alpha
Helix 97	AK7	D	252	257	Right-handed alpha
Helix 98	AK8	D	262	266	Right-handed 310
Helix 99	AK9	D	298	310	Right-handed alpha
Helix 100	AL1	D	339	352	Right-handed alpha
Helix 101	AL2	D	472	487	Right-handed alpha
Helix 102	AL3	D	497	503	Right-handed alpha
Helix 103	AL4	D	505	515	Right-handed alpha
Helix 104	AL5	D	525	538	Right-handed alpha
Helix 105	AL6	D	557	569	Right-handed alpha
Helix 106	AL7	D	570	577	Right-handed alpha
Helix 107	AL8	D	583	591	Right-handed alpha
Helix 108	AL9	D	613	626	Right-handed alpha
Helix 109	AM1	D	636	646	Right-handed alpha
Helix 110	AM2	D	680	693	Right-handed alpha

There are 33 sheets in PDB entry 6JUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	6	9	parallel
Strand 3	A	267	268	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	79	82	anti-parallel
Strand 3	A	107	109	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	156	160	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	181	183	anti-parallel
Strand 3	A	205	207	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	226	229	anti-parallel
Strand 3	A	246	249	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	292	first strand
Strand 2	A	329	337	anti-parallel
Strand 3	A	313	321	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	430	433	anti-parallel
Strand 3	A	407	411	anti-parallel
Strand 4	A	416	420	anti-parallel
Strand 5	A	395	400	parallel
Strand 6	A	389	392	anti-parallel
Strand 7	A	438	439	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	598	first strand
Strand 2	A	520	524	parallel
Strand 3	A	491	496	parallel
Strand 4	A	628	634	parallel
Strand 5	A	652	657	parallel
Strand 6	A	674	678	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	6	9	parallel
Strand 3	B	267	268	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	79	82	anti-parallel
Strand 3	B	107	109	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	132	136	anti-parallel
Strand 3	B	155	160	parallel
Strand 4	B	280	281	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	181	183	anti-parallel
Strand 3	B	205	207	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	226	229	anti-parallel
Strand 3	B	246	249	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	290	first strand
Strand 2	B	330	337	anti-parallel
Strand 3	B	313	320	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	369	first strand
Strand 2	B	430	433	anti-parallel
Strand 3	B	407	411	anti-parallel
Strand 4	B	416	420	anti-parallel
Strand 5	B	395	400	parallel
Strand 6	B	389	392	anti-parallel
Strand 7	B	438	439	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	598	first strand
Strand 2	B	520	524	parallel
Strand 3	B	491	495	parallel
Strand 4	B	628	634	parallel
Strand 5	B	652	656	parallel
Strand 6	B	675	677	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	6	9	parallel
Strand 3	C	267	268	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	76	first strand
Strand 2	C	79	82	anti-parallel
Strand 3	C	107	110	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	156	160	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	180	183	anti-parallel
Strand 3	C	205	207	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	226	229	anti-parallel
Strand 3	C	246	249	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	290	first strand
Strand 2	C	330	337	anti-parallel
Strand 3	C	313	320	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	369	first strand
Strand 2	C	430	433	anti-parallel
Strand 3	C	407	411	anti-parallel
Strand 4	C	416	420	anti-parallel
Strand 5	C	395	400	parallel
Strand 6	C	388	392	anti-parallel
Strand 7	C	438	440	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	598	first strand
Strand 2	C	520	524	parallel
Strand 3	C	491	496	parallel
Strand 4	C	628	634	parallel
Strand 5	C	652	656	parallel
Strand 6	C	674	677	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	6	9	parallel
Strand 3	D	267	268	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	79	82	anti-parallel
Strand 3	D	107	109	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	125	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	155	160	parallel
Strand 4	D	280	281	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	181	183	anti-parallel
Strand 3	D	205	207	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	226	229	anti-parallel
Strand 3	D	246	249	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	290	first strand
Strand 2	D	331	337	anti-parallel
Strand 3	D	313	316	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	369	first strand
Strand 2	D	430	433	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	410	first strand
Strand 2	D	417	420	anti-parallel
Strand 3	D	395	400	parallel
Strand 4	D	388	392	anti-parallel
Strand 5	D	438	440	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	595	598	first strand
Strand 2	D	520	524	parallel
Strand 3	D	491	496	parallel
Strand 4	D	628	634	parallel
Strand 5	D	652	656	parallel
Strand 6	D	675	677	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JUY