Analysis of interatomic Contacts of Structural Units in PDB entry:
6JV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JV0 entry

There is 1 chain in PDB entry 6JV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PRO 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6JV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
33 50Right-handed alpha
Helix 3
AA3
A
63 71Right-handed 310
Helix 4
AA4
A
87 92Right-handed alpha
Helix 5
AA5
A
93 104Right-handed alpha
Helix 6
AA6
A
118 121Right-handed 310
Helix 7
AA7
A
141 143Right-handed 310
Helix 8
AA8
A
144 153Right-handed alpha
Helix 9
AA9
A
168 171Right-handed 310
Helix 10
AB1
A
177 179Right-handed 310
Helix 11
AB2
A
185 188Right-handed 310
Helix 12
AB3
A
189 200Right-handed alpha
Helix 13
AB4
A
201 203Right-handed 310
Helix 14
AB5
A
209 214Right-handed alpha
Helix 15
AB6
A
233 243Right-handed alpha
Helix 16
AB7
A
252 257Right-handed alpha
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There are 5 sheets in PDB entry 6JV0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
6 9parallel
Strand 3
A
267 268anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
107 109parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
132 136anti-parallel
Strand 3
A
156 160parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
181 183anti-parallel
Strand 3
A
205 207parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
226 229anti-parallel
Strand 3
A
246 249parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il